| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,952,471 – 15,952,588 |
| Length | 117 |
| Max. P | 0.736442 |
| Location | 15,952,471 – 15,952,588 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.02 |
| Shannon entropy | 0.33246 |
| G+C content | 0.32919 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -17.74 |
| Energy contribution | -18.94 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15952471 117 - 22422827 GUUUUGUCCGUAUCAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGGCAACGAUAAGAUAUUAGUUGUGAUUUCUUCGGUUAUAUUUUGUUUGG---UUAACUUUGAA (((....(((...(((((((((((((((.(((((((((((...)))))))))))(((((((((............)))))..)))))))))))))))))))..)))---..)))...... ( -31.40, z-score = -3.20, R) >droSim1.chrX 12312764 115 - 17042790 GAUUUGU-CGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGAAAUAUUAGAAGACAACGAUAAGAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUUUUUGG----UAACUUUGAA ...((..-((...(((((((((((((((.(((((((...........)))))))(((((((((............))))).)))).)))))))))))))))..)).----.))....... ( -25.50, z-score = -1.77, R) >droSec1.super_47 6237 117 - 216421 GUUUUGUCCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGAAAUAUUAGAAGACAACGAUAAUAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG---UUAACUUUGAA (((....(((....((((((((((((((..(((((((((...(((....))).....)))))))(((((......)))))..))..))))))))))))))...)))---..)))...... ( -26.90, z-score = -2.22, R) >droYak2.chrX 10100688 120 - 21770863 GUAGUGUCCGUAUCUGAAUAUUGCUGAGCUAAUGUUGUUGACUUCUCAAUAUUAGAAUUCAACGAUAAAUUCUGCGCCGUACUUUUCUCCGCAAUAUUUGCUUUAGUGCUUAAUUUUGAA (((.((...((....(((((((((.(((....(((((((((.((((.......)))).))))))))).....(((...))).....))).)))))))))))..)).)))........... ( -22.80, z-score = -1.06, R) >droEre2.scaffold_4690 7623745 120 + 18748788 UUAUCGUCCGUAUACGAAUGUGGCUGAGUUAAAGUUGUUGAGUUAUCAAUAUUGGAAGGCAACAAUAAAUUAUUGGUUGUGCUUUUCUCGGUAAAAUUUUCAUUGGUGCUUAAUUUUGGA .........((((..(((.((.(((((........((((((....))))))..((((((((.(((((...)))))....)))))))))))))...)).)))....))))........... ( -23.20, z-score = -0.22, R) >consensus GUUUUGUCCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGACAACGAUAAAAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUCUUUGG___UUAACUUUGAA ..............((((((((((((((((((((((((((...))))))))))))...(((((............)))))......)))))))))))))).................... (-17.74 = -18.94 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:14 2011