| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,952,098 – 15,952,212 |
| Length | 114 |
| Max. P | 0.940124 |
| Location | 15,952,098 – 15,952,212 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.47 |
| Shannon entropy | 0.32124 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -26.92 |
| Consensus MFE | -18.74 |
| Energy contribution | -20.42 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15952098 114 - 22422827 UGUCCGUAUCAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGGCAACGAUAAGAUAUUAGUUGUGAUUUCUUCGGUUAUAUUUUGUUUGG---UUAACUUUGAAC--- ...(((...(((((((((((((((.(((((((((((...)))))))))))(((((((((............)))))..)))))))))))))))))))..)))---............--- ( -30.10, z-score = -2.79, R) >droSim1.chrX 12312391 114 - 17042790 UGUCCGUAUAAGAAUGUGGCUGAGUUAAUAUUGUUGACGUAGCAAUAUUAGAAGACAACGAUAAGAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG---UUAACUUUGAAC--- ...(((....((((((((((((((.(((((((((((...)))))))))))(((((((((............))))).)))).))))))))))))))...)))---............--- ( -30.50, z-score = -3.17, R) >droSec1.super_47 5864 114 - 216421 UGUCCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGAAAUAUUAGAAGACAACGAUAAUAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG---UUAACUUUGAAC--- ...(((....((((((((((((((..(((((((((...(((....))).....)))))))(((((......)))))..))..))))))))))))))...)))---............--- ( -25.60, z-score = -1.84, R) >droYak2.chrX 10100210 120 - 21770863 UGUCCGUAUCUGAAUAUUGCUGAGCUAAUGUUGUUGACUUCUCAAUAUUAGAAUUCAACGAUAAAUUCUGCGCCGUACUUUUCUCCGCAAUAUUUUGUUUAGUGCUUAAUUUUGAAAAUG .(..(....(.(((((((((.(((....(((((((((.((((.......)))).))))))))).....(((...))).....))).))))))))).)....)..)............... ( -22.60, z-score = -1.78, R) >droEre2.scaffold_4690 7622955 120 + 18748788 CGUCCGUAUACGAAUGUGGCUGAGUUAAAGAUGUUGAGUUAUCAAUAUUGGAAGGCAACAAUAAAUUAUUGGUUGUGCUUUUCUCGGUAAAAUUUUCUUUGGUGCUUAAUUUUGGAAAUA .....((((..(((.((.(((((......((((((((....))))))))((((((((.(((((...)))))....)))))))))))))...)).)))....))))............... ( -25.80, z-score = -1.21, R) >consensus UGUCCGUAUAAGAAUGUGGCUGAGUUAAUGUUGUUGACGUAGCAAUAUUAGAAGACAACGAUAAAAUAUUAGUUGUGCUUUCCUCGGUUAUAUUUUGUUUGG___UUAACUUUGAAC___ ...(((....((((((((((((((((((((((((((...))))))))))))...(((((............)))))......))))))))))))))...))).................. (-18.74 = -20.42 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:13 2011