| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,951,536 – 15,951,666 |
| Length | 130 |
| Max. P | 0.883037 |
| Location | 15,951,536 – 15,951,666 |
|---|---|
| Length | 130 |
| Sequences | 5 |
| Columns | 148 |
| Reading direction | forward |
| Mean pairwise identity | 70.76 |
| Shannon entropy | 0.49012 |
| G+C content | 0.37561 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -14.42 |
| Energy contribution | -14.74 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15951536 130 + 22422827 AAACUACGGAAAC---UUCGGAAGAACCGCUUUGUUUGUGUACAUGCGUAAUUGAUCCUGAUGAGGAUAUUUGCUCG----UGCAAUUGCAAAAUUACAAAAAGUAUACCGACAGGAAGAACCACUUCAAAGGUAAA----------- .......(....)---.((....))(((...(((((.(((((((((.((((...(((((....)))))..)))).))----)((....)).............)))))).)))))((((.....))))...)))...----------- ( -31.80, z-score = -1.95, R) >droSec1.super_47 5319 130 + 216421 CAACUACUGAGAC---UUCCGAGCAACCGCUUUGUUUGUGUACUUGCGUAAUUGAUCCUGAUGAGGAUAUUUGCUCG----UGUAAUUGCAAAAUAAAAAAAAAUAUACCGACAGGAAGAACUACCUUACAGGUAAA----------- ............(---((((((((....))))((((.(((((...(.((((...(((((....)))))..)))).).----(((....))).............))))).)))))))))...((((.....))))..----------- ( -28.30, z-score = -1.83, R) >droYak2.chrX 10099720 133 + 21770863 GAACUACUGAAACUACUUCCGAGGAACCGCUUUGUUUGUGUACUUGCGUAAUUGAUCCCGAUGAGGAUAUUUGCUCG----UGUAAUUGCAAAAUUACGAAGAGUACACCGACAGCAAACACUACUUCAAAGGUAAA----------- ..(((..((((.....(((....)))..(((..(((.((((((((.(((((((.((((......))))..((((...----.......)))))))))))..)))))))).)))))).........))))..)))...----------- ( -31.70, z-score = -1.71, R) >droEre2.scaffold_4690 7622380 130 - 18748788 GAACUACUGAAAC---UUCCGAAGAACCGAUUUGUUUGUGUACUUGCGUAAUUGAUCCUGAUGAGGAUAUUUGCUCU----UGUAAUUGCAAAAUUACGAAGAGUACACCGACAACAAAAACUACUUUAAAGGUAAA----------- ...........((---((..((((.......(((((.((((((((.(((((((.(((((....)))))..((((...----.......)))))))))))..)))))))).))))).........))))..))))...----------- ( -30.69, z-score = -3.41, R) >droVir3.scaffold_13049 10281602 143 + 25233164 -AAUUGAGGAAAAA--UAUGAAAGAACCACUUGGUUUUCGAUAUUAAGUAUUUCAUUUUUAAUAACAUUUUAGUUCAGGGCUGUUAUUCACACCCAACGCAAGGGUUAGCCACA--AAUGACCUUGCUAAAGGCAACCCAAAUCCAAC -......(((....--..((((((((((....)))))).(.(((((((.........))))))).).......))))(((.(((.....)))))).......(((((.(((...--...............))))))))...)))... ( -27.87, z-score = -0.70, R) >consensus GAACUACUGAAAC___UUCCGAAGAACCGCUUUGUUUGUGUACUUGCGUAAUUGAUCCUGAUGAGGAUAUUUGCUCG____UGUAAUUGCAAAAUUACGAAAAGUAUACCGACAGCAAAAACUACUUUAAAGGUAAA___________ ...............................(((((.((((((((..((((((.(((((....)))))..((((........))))......))))))...)))))))).))))).....(((........))).............. (-14.42 = -14.74 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:12 2011