Locus 14853

Sequence ID dm3.chrX
Location 15,876,565 – 15,876,681
Length 116
Max. P 0.970035
window20454 window20455

overview

Window 4

Location 15,876,565 – 15,876,681
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.53
Shannon entropy 0.13095
G+C content 0.42811
Mean single sequence MFE -34.94
Consensus MFE -28.36
Energy contribution -28.36
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -2.41
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.24
SVM RNA-class probability 0.914255
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15876565 116 + 22422827
AACUGGAUUU-CACUAACCGAAGAAACUCGAGCGGAGCUAGCGUUUU-CGUUGCUCCGG--GAGUUAUCCGUACUCGAAGUGUCGUUCAAUAUAUUUGCAUAUAUUGUUAUACUUUUCGG
..........-......(((((((...(((((((((((.((((....-))))))))))(--((....)))...))))).((((....((((((((....))))))))..))))))))))) ( -37.30, z-score =  -3.46, R)
>droEre2.scaffold_4690 7575106 119 - 18748788
AACUGGGAUUUCACUAACCGAAGAAACUCGAACGGAGCUGACGUUUU-CGAUGCUCUCCGUGAGUUAUCCGUACUCAAAGUGUCGCUCAAUAUAUUUGCAUAUAUUGUUAUAUUUUCCGG
..((((((...((((...(((......))).((((((..(.((((..-.))))).))))))((((.......))))..)))).....((((((((....)))))))).......)))))) ( -26.00, z-score =  -0.45, R)
>droYak2.chrX 10065352 120 + 21770863
AACUGGGAUUUCACUAACCGAAGAAACUCGAACGGAGCUGGCGUUUUUCGAUGCUCCGACGGAGUUAUCCGUACUCGAAGUGUCGCUCAAUAUAUUUGCAUAUAUUGUUAUAUUUUUCGG
.................((((((((((((((.((((((...((.....))..))))))(((((....)))))..))).)))......((((((((....)))))))).....)))))))) ( -35.80, z-score =  -2.58, R)
>droSec1.super_183 1503 118 + 33538
AACUGGGAUU-CACUAACCGAAGAAACUCGAGCGGAGCUAGCGUUUU-CGUUGCUCCGGGGGAGUUAUCCGUACUCGAAGUGUCGUUCAAUAUAUUUGCAUAUAUUGUUAUACUUUUCGG
...(((....-..))).(((((((...(((((((((((.((((....-))))))))))..(((....)))...))))).((((....((((((((....))))))))..))))))))))) ( -37.80, z-score =  -2.79, R)
>droSim1.chrX 12288169 118 + 17042790
AACUGGGAUU-CACUAACCGAAGAAACUCGAGCGGAGCUAGCGUUUU-CGUUGCUCCGGGGGAGUUAUCCGUACUCGAAGUGUCGUUCAAUAUAUUUGCAUAUAUUGUUAUACUUUUCGG
...(((....-..))).(((((((...(((((((((((.((((....-))))))))))..(((....)))...))))).((((....((((((((....))))))))..))))))))))) ( -37.80, z-score =  -2.79, R)
>consensus
AACUGGGAUU_CACUAACCGAAGAAACUCGAGCGGAGCUAGCGUUUU_CGUUGCUCCGGGGGAGUUAUCCGUACUCGAAGUGUCGUUCAAUAUAUUUGCAUAUAUUGUUAUACUUUUCGG
.................((((...(((((...((((((.((((.....))))))))))...)))))..........(((((((....((((((((....))))))))..))))))))))) (-28.36 = -28.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 15,876,565 – 15,876,681
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.53
Shannon entropy 0.13095
G+C content 0.42811
Mean single sequence MFE -31.80
Consensus MFE -26.04
Energy contribution -26.08
Covariance contribution 0.04
Combinations/Pair 1.09
Mean z-score -2.75
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.83
SVM RNA-class probability 0.970035
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15876565 116 - 22422827
CCGAAAAGUAUAACAAUAUAUGCAAAUAUAUUGAACGACACUUCGAGUACGGAUAACUC--CCGGAGCAACG-AAAACGCUAGCUCCGCUCGAGUUUCUUCGGUUAGUG-AAAUCCAGUU
(((((........((((((((....))))))))...((.(((.(((((..(((....))--).(((((..((-....))...))))))))))))).)))))))......-.......... ( -32.40, z-score =  -3.16, R)
>droEre2.scaffold_4690 7575106 119 + 18748788
CCGGAAAAUAUAACAAUAUAUGCAAAUAUAUUGAGCGACACUUUGAGUACGGAUAACUCACGGAGAGCAUCG-AAAACGUCAGCUCCGUUCGAGUUUCUUCGGUUAGUGAAAUCCCAGUU
..(((........((((((((....)))))))).....((((......((.((.(((((((((((.....((-....))....))))))..)))))...)).)).))))...)))..... ( -29.20, z-score =  -1.56, R)
>droYak2.chrX 10065352 120 - 21770863
CCGAAAAAUAUAACAAUAUAUGCAAAUAUAUUGAGCGACACUUCGAGUACGGAUAACUCCGUCGGAGCAUCGAAAAACGCCAGCUCCGUUCGAGUUUCUUCGGUUAGUGAAAUCCCAGUU
(((((........((((((((....))))))))...((.(((.((((.(((((....)))))((((((..((.....))...))))))))))))).)))))))................. ( -32.60, z-score =  -2.75, R)
>droSec1.super_183 1503 118 - 33538
CCGAAAAGUAUAACAAUAUAUGCAAAUAUAUUGAACGACACUUCGAGUACGGAUAACUCCCCCGGAGCAACG-AAAACGCUAGCUCCGCUCGAGUUUCUUCGGUUAGUG-AAUCCCAGUU
(((((........((((((((....))))))))...((.(((.(((((..(((....)))...(((((..((-....))...))))))))))))).)))))))......-.......... ( -32.40, z-score =  -3.15, R)
>droSim1.chrX 12288169 118 - 17042790
CCGAAAAGUAUAACAAUAUAUGCAAAUAUAUUGAACGACACUUCGAGUACGGAUAACUCCCCCGGAGCAACG-AAAACGCUAGCUCCGCUCGAGUUUCUUCGGUUAGUG-AAUCCCAGUU
(((((........((((((((....))))))))...((.(((.(((((..(((....)))...(((((..((-....))...))))))))))))).)))))))......-.......... ( -32.40, z-score =  -3.15, R)
>consensus
CCGAAAAGUAUAACAAUAUAUGCAAAUAUAUUGAACGACACUUCGAGUACGGAUAACUCCCCCGGAGCAACG_AAAACGCUAGCUCCGCUCGAGUUUCUUCGGUUAGUG_AAUCCCAGUU
(((((........((((((((....))))))))...((.(((.(((((..(((....)))...(((((..((.....))...))))))))))))).)))))))................. (-26.04 = -26.08 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:07 2011