| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,827,657 – 15,827,707 |
| Length | 50 |
| Max. P | 0.811364 |
| Location | 15,827,657 – 15,827,707 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.20 |
| Shannon entropy | 0.10011 |
| G+C content | 0.30000 |
| Mean single sequence MFE | -8.59 |
| Consensus MFE | -8.06 |
| Energy contribution | -8.30 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15827657 50 + 22422827 AUUCGCUUAAAAAUAAACUUGCAAAUUGUGGAAACAAACAAACAAGUGUG ................(((((.......((....))......)))))... ( -6.82, z-score = -0.88, R) >droEre2.scaffold_4690 7528283 50 - 18748788 AUUUCCUUAAAAAUAAACUUGUCAAUUGUGGAAACAAACAAACAAGUGUG ................((((((......((....)).....))))))... ( -8.50, z-score = -1.58, R) >droYak2.chrX 10018325 50 + 21770863 AUUUGCUUAAAAAUAAACUUGACAAUUGUGGAAACAAACAAACAAGUGUG ................(((((.......((....))......)))))... ( -6.82, z-score = -0.80, R) >droSec1.super_37 403775 50 + 454039 AUUCGCUUAAAAAUAAACUUGCAAAUUGUGGAAACAAACAAGCAAGUGUG ................((((((......((....)).....))))))... ( -10.40, z-score = -2.06, R) >droSim1.chrX_random 4095866 50 + 5698898 AUUCGCUUAAAAAUAAACUUGCAAAUUGUGGAAACAAACAAGCAAGUGUG ................((((((......((....)).....))))))... ( -10.40, z-score = -2.06, R) >consensus AUUCGCUUAAAAAUAAACUUGCAAAUUGUGGAAACAAACAAACAAGUGUG ................((((((......((....)).....))))))... ( -8.06 = -8.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:03 2011