| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,815,293 – 15,815,413 |
| Length | 120 |
| Max. P | 0.918228 |
| Location | 15,815,293 – 15,815,413 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.21 |
| Shannon entropy | 0.35652 |
| G+C content | 0.39410 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -16.57 |
| Energy contribution | -17.44 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15815293 120 + 22422827 GGUCCCUAAAGCUUCAUCAUGAUGAGCUUUGCAAAAGCCUAGCUGGGCUUUUCGACCUUUUUGCCACUUUUUUCUUCAAAACUUUCUGGCAUGAUGAACUUGUGGCUUAGAAAUAAUACU ((((..(((((((.(((....)))))))))).((((((((....)))))))).))))(((..(((((....(((.(((...(.....)...))).)))...)))))..)))......... ( -33.70, z-score = -2.77, R) >droSec1.super_37 391570 114 + 454039 GGUCGCCAAAGCUUUAUCAUGAUGAGCUUUGCAAAAGC-----UGGGCUUUUUGUCCUUUUUGCUA-UUUUGUCUUCAAAACUGUCUAGCAUGAUGAAUUUUUGGCUUAGAAAUAAUACU ....(((((((.(((((((((..((.....(((((((.-----.((((.....)))))))))))..-(((((....)))))...))...))))))))).))))))).............. ( -32.20, z-score = -2.82, R) >droYak2.chrX 10005946 117 + 21770863 UGUCUCAAAAGCUUAAUCUUGACGAGCUUUACAAAAGCCUAGCUGGGCUUUUCCACCU-CGUGCCA-UGGUUUCUACAAAAUUUGCUUUCUCGAUAAACUUUUGAAC-AGAAAUAAUUCU (((.(((((((.((.(((..((.((((.....((((((((....))))))))..(((.-.......-.))).............))))))..))).)))))))))))-)........... ( -23.60, z-score = -1.31, R) >droEre2.scaffold_4690 7515873 118 - 18748788 GGACCCGAAAGCUUCAUCGUGAUGAGCUUUACAAAAGCCCAGCUGGGCUUCUCCACCUUCUUGCCA-UGUUUUAUACAAAACUUGCUUACGCGAUAAACUUUUGGCC-GGAAAUAAUACU ((..(((((((.((.((((((.(((((.......((((((....))))))................-.(((((....)))))..))))))))))).)))))))))))-............ ( -32.20, z-score = -2.92, R) >consensus GGUCCCAAAAGCUUCAUCAUGAUGAGCUUUACAAAAGCCUAGCUGGGCUUUUCCACCUUCUUGCCA_UGUUUUCUACAAAACUUGCUUGCACGAUAAACUUUUGGCC_AGAAAUAAUACU ....(((((((.(((((((((....((((.....)))).......(((..............)))........................))))))))))))))))............... (-16.57 = -17.44 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:01 2011