| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,813,416 – 15,813,553 |
| Length | 137 |
| Max. P | 0.626925 |
| Location | 15,813,416 – 15,813,553 |
|---|---|
| Length | 137 |
| Sequences | 3 |
| Columns | 163 |
| Reading direction | forward |
| Mean pairwise identity | 67.16 |
| Shannon entropy | 0.44961 |
| G+C content | 0.34904 |
| Mean single sequence MFE | -35.24 |
| Consensus MFE | -17.08 |
| Energy contribution | -18.75 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15813416 137 + 22422827 CAGUAAGAAAAUGUUGUUGUUCGAAAGGGAUAAAGAAAUCUCUGGAGCAAUGGAAU--------------GCUAUGAAAGCACUUCUAGAGAUUUCUAUAACCUUCACAAUGUUCUACAUUUAGUUUCGAUCUUAAUCUUUAUAUCCUAUA------------ ........(((.((((....(((((((((.((.(((((((((((((((.((((...--------------.))))....))...))))))))))))).)).)))....((((.....))))...))))))...)))).)))..........------------ ( -28.80, z-score = -0.89, R) >droYak2.chrX 10004062 136 + 21770863 CAGUAAGCAAAUGUUAAUGUUCGGUGGCGGUAAAGAAAUCUCUGGAGUCCAGAGAU---------------------------UUUUAGAGAUUUCUUUGACCUUCACAAUGAUAUUGAUUUCAUUUCGAAUCUAAUCUUUAUACCAUACCGAUUAUGCUCUA .(((((((....))).....((((((..((((..(((((((((((...))))))))---------------------------)))((((((((..(((((.......(((((........))))))))))...)))))))))))).))))))...))))... ( -36.51, z-score = -2.91, R) >droSec1.super_37 389672 163 + 454039 CAGUAAGAAAAUGUUGAUGUUCGGUGGAGCUGAAGAAAUCUCUGGAGCCUUGAAACCAUAGAGCAAUGGAGCUAUGCUAGCACUUCUAGAGAUUUCUAUAACCUUCACAAUGUUCCACAUUUAGUUUCGAUCUUAAUCUUGAUACUAUACCCAUUAUCCUGUA (((.....((((((.((......((((((....((((((((((((((........((((......)))).((((...))))..)))))))))))))).....)))))).....)).))))))(((.((((........)))).)))............))).. ( -40.40, z-score = -1.43, R) >consensus CAGUAAGAAAAUGUUGAUGUUCGGUGGAGAUAAAGAAAUCUCUGGAGCCAUGAAAU______________GCUAUG__AGCACUUCUAGAGAUUUCUAUAACCUUCACAAUGUUCUACAUUUAGUUUCGAUCUUAAUCUUUAUACCAUACC_AUUAU_CU_UA ........((((((.........((((((....((((((((((((((....................................)))))))))))))).....))))))........))))))......................................... (-17.08 = -18.75 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:00 2011