| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,804,612 – 15,804,770 |
| Length | 158 |
| Max. P | 0.967740 |
| Location | 15,804,612 – 15,804,770 |
|---|---|
| Length | 158 |
| Sequences | 5 |
| Columns | 164 |
| Reading direction | forward |
| Mean pairwise identity | 77.81 |
| Shannon entropy | 0.38902 |
| G+C content | 0.37180 |
| Mean single sequence MFE | -42.08 |
| Consensus MFE | -22.01 |
| Energy contribution | -24.45 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15804612 158 + 22422827 GAUAAACAAAAGUAACCUGUGGAUCCCUUCCGAGA--AAUGAUGUACCGAUAUA----UGUACACAUCGAGAUUAAAAUGGACUUCCAUGUCCAUUGUCCUAAUUUCGGUGCUGCAGUUUUUUGUUGUUUUUUAGGAAAAACUGCAGCGUGGAGAAUGCUUUCA ........((((((..(((((.(((..(((...))--)..))).))).......----....(((((((((((((.(((((((......)))))))....))))))))))(((((((((((((.(........).)))))))))))))))).))..)))))).. ( -48.70, z-score = -4.14, R) >droSim1.chrX 12223724 159 + 17042790 GAUAAACAAAAGUAACGUGUGGAUCCUUUCCGAGA--AAUGAUAUACCAAUAUACAUAUGUACACAUGGAGAUUAAAAUGGACUUCCAUGUCCAUUGUCCUAAUUUUGAUGCUGCAGUUUC--GUUGUUCAUC-GGAAUAACUGCAGCGUGGAGAAUGCUUUCA ........((((((..(((((((.....)))....--.(((((((....)))).)))....)))).(((.(((...(((((((......))))))))))))).((((.(((((((((((..--.(((.....)-))...))))))))))).)))).)))))).. ( -43.70, z-score = -2.44, R) >droSec1.super_37 381052 155 + 454039 GAUAAACAAAAGUAACCUGUGGAUCCCUUCCAAGA--AAUGAUAUACCAAUAUU----UGUACACAUCGAGAUUAAAAUGGACUUCCAUGUCCAUUGUCCUAAUUUUGAUGCUGCAGUUUC--GUUGUUCGUU-GGAAUAACUGCAGCGUGGAGAAUGCUUUCA ........((((((..((.((((.....))))...--.................----....(((((((((((((.(((((((......)))))))....))))))))))((((((((...--..(((((...-.)))))))))))))))).))..)))))).. ( -43.60, z-score = -3.32, R) >droYak2.chrX 9995444 158 + 21770863 GAUAAACAAUAUUAACCUGUGGAUCUUUUCCCAGA--AAUGAU-UGUAAAUGUACAUAUAUACACAUCGACAUUAAAAUGGACUUAGUUGUCCAUUGACCCAGUUUUAAAGCUGCAGUUUC--GUUCUUCGCU-GGAAAAACUGUAGCGUCGAGGAUGCUUUCA ................(((.(((.....)))))).--..(((.-.(((..((((......))))..(((((.....(((((((......)))))))..............((((((((((.--.((((.....-)))))))))))))))))))...)))..))) ( -43.00, z-score = -3.29, R) >droEre2.scaffold_4690 7505294 161 - 18748788 GAUAAACAGUAUUAACCUUUGCAUCUUCUUAGAAAUGAAAUACAUACAUAUGUAAAUAAGUACGCAUUGAGAAUAAAAUGUAGUUCCAUGUCCAAUGACACAGUCUUGCUUUUGCAAGAUAA-GUUGUUCGCC--GAAAAACUGCAGCGUUGGCAACGCUAUUA .......((..((..((..(((...(((((((........(((((....))))).....(....).))))))).....(((((((...((.(.((..((...(((((((....)))))))..-))..)).).)--)...))))))))))..)).))..)).... ( -31.40, z-score = -0.12, R) >consensus GAUAAACAAAAGUAACCUGUGGAUCCUUUCCGAGA__AAUGAUAUACCAAUAUA_AUAUGUACACAUCGAGAUUAAAAUGGACUUCCAUGUCCAUUGUCCUAAUUUUGAUGCUGCAGUUUC__GUUGUUCGUU_GGAAAAACUGCAGCGUGGAGAAUGCUUUCA (((..(((.........)))..)))..(((((.................................((((((((((.(((((((......)))))))....))))))))))((((((((((.......(((.....))))))))))))).))))).......... (-22.01 = -24.45 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:57 2011