Locus 14842

Sequence ID dm3.chrX
Location 15,792,047 – 15,792,167
Length 120
Max. P 0.861586
window20437

overview

Window 7

Location 15,792,047 – 15,792,167
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.52
Shannon entropy 0.20937
G+C content 0.44455
Mean single sequence MFE -27.90
Consensus MFE -24.40
Energy contribution -24.60
Covariance contribution 0.20
Combinations/Pair 1.27
Mean z-score -1.67
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.96
SVM RNA-class probability 0.861586
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15792047 120 - 22422827
AGAGGCAGGAAGGAAGUUUCUGGCAUAAAUGAGGGAUGCUGGAUGAAACCACCAGGCGACUGACUGGCACACAAUGAUUUGGAAGGAAACAGCGUCCUAAAAGUUCCGAAAAGGAAGGAA
...(.((((((.....)))))).)........(((((((((.......(((.(((....)))..)))....(((....)))........))))))))).....((((.....)))).... ( -32.20, z-score =  -1.52, R)
>droSim1.chrX 12210986 111 - 17042790
AGAGGCAGGAAGGAAGUUUCUGGCAUAAAUGAGGGAUGCUGGAUGAAA---------GGUCGGCUGGUUUACAAUGAGUUGGAAGGAAACAGCAUCCUAAAAGUCCCGAAAAGGAAGGAA
...(.((((((.....)))))).)........(((((((((.......---------..((((((.((.....)).)))))).......))))))))).....(((......)))..... ( -29.39, z-score =  -1.99, R)
>droSec1.super_37 368465 111 - 454039
AGAGGCAGGAAGGAAGUUUCUGGCAUAAAUGAGGGAUGCUGGAUGAAA---------GGUCGACUGGUGUACAAUGAGUUGGAAGGAAACAGCAUCCUAAAAGUCCCGAAAAGGAAGGAA
...(.((((((.....)))))).)........(((((((((.......---------..((((((.((.....)).)))))).......))))))))).....(((......)))..... ( -30.99, z-score =  -2.94, R)
>droYak2.chrX 9983313 111 - 21770863
AAAGGCAACAAGGAAAUUGCUGGCAUAAAUGAGGGAAACUGGAUGAAA---------GAUCGACUGGUUUACAAUGAGUUGGAAGGAAACAACAUCCUAAAAGUCCCGAAAAGGAAGGAA
...(((((........)))))...........((((....(((((...---------..((((((.((.....)).))))))..(....)..)))))......))))............. ( -25.20, z-score =  -2.09, R)
>droEre2.scaffold_4690 7493055 111 + 18748788
AAAGGCAACAAGGAAAUUGCUGGCAUAUAUGAGGGAAUCUGGAUGAAA---------GGUCGACUGGCUUACAAUGAGUUGGAAGGAAACAACCUCUUAAAAGUCCCGAAAAGGAAGGAA
...(((((........)))))...........((((..((...(((.(---------(((...(..((((.....))))..)..(....).)))).)))..))))))............. ( -21.70, z-score =   0.20, R)
>consensus
AGAGGCAGGAAGGAAGUUUCUGGCAUAAAUGAGGGAUGCUGGAUGAAA_________GGUCGACUGGUUUACAAUGAGUUGGAAGGAAACAGCAUCCUAAAAGUCCCGAAAAGGAAGGAA
...(.((((((.....)))))).)........(((((...(((((..............((((((.((.....)).))))))..(....)..))))).....)))))............. (-24.40 = -24.60 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:52 2011