Locus 14841

Sequence ID dm3.chrX
Location 15,788,044 – 15,788,162
Length 118
Max. P 0.877554
window20436

overview

Window 6

Location 15,788,044 – 15,788,162
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 95.93
Shannon entropy 0.07152
G+C content 0.35440
Mean single sequence MFE -22.22
Consensus MFE -20.48
Energy contribution -20.32
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.03
SVM RNA-class probability 0.877554
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15788044 118 + 22422827
AAGAACAUUAAUCAAUAUGCCCAUUCAUGUAUUUACAAACUGCAUUGAGCCAUGUAAAGUUUGUGCUUACAUAAGUCCACUAUGUUCAAAAUAGUCCAGUUAGAUUUCGCAUGCGCCG
...............(((((....(((((((..((((((((((((......))))..))))))))..)))))......(((((.......))))).......))....)))))..... ( -21.20, z-score =  -0.88, R)
>droSim1.chrX 12206973 118 + 17042790
AAGAACAUUAAUCAAUAUGCUCAUUCAUGUAUUUACAAACUGCAUUAAACCAUGUAAAGUUUGUGCUUACAUAAGUCCACUAUGUUCAAAAUAGUCCAGAUAGAAUUCGCAUGCGCCG
...............(((((..(((((((((..((((((((((((......))))..))))))))..)))))..(((.(((((.......)))))...))).))))..)))))..... ( -24.40, z-score =  -2.53, R)
>droSec1.super_37 364657 118 + 454039
AAGAACAUUAAUCAAUAUGCCCAUUCAUGUAUUUACAAACUGCAUUAAACCAUGUAAAGUUUGUGCUUACAUAAGUCCACUAUGUUCAAAAUAGUCCAGAUAGAAUUCGCAUGCGCCG
...............(((((..(((((((((..((((((((((((......))))..))))))))..)))))..(((.(((((.......)))))...))).))))..)))))..... ( -24.30, z-score =  -2.83, R)
>droYak2.chrX 9979469 118 + 21770863
AAGAACAUUAAUCAAUAUGCCCAUUCAUGUAUUUACAAACUGCAUUAAACCAUGUAAAGUUUGUGCUUACAUAAGCCCACUAUGUUCAAAAUAGUCCAGAUAGAUUUCGCAUGCGCCG
...............(((((....(((((((..((((((((((((......))))..))))))))..)))))......(((((.......))))).......))....)))))..... ( -21.20, z-score =  -1.67, R)
>droEre2.scaffold_4690 7489215 115 - 18748788
---AACAUUAAUCAAUAUGCCCAUUCAUGUAUUUACGAACUGCAUUAAACCAUGUAAAGUUUGUGCUUACAUAAGCCCACUAUGUUCAAAAUAGUCCAGAUACAUUUCGCAUGCGCCG
---............(((((......(((((..((((((((((((......))))..))))))))..)))))......(((((.......))))).............)))))..... ( -20.00, z-score =  -1.39, R)
>consensus
AAGAACAUUAAUCAAUAUGCCCAUUCAUGUAUUUACAAACUGCAUUAAACCAUGUAAAGUUUGUGCUUACAUAAGUCCACUAUGUUCAAAAUAGUCCAGAUAGAUUUCGCAUGCGCCG
...............(((((......(((((..((((((((((((......))))..))))))))..)))))......(((((.......))))).............)))))..... (-20.48 = -20.32 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:51 2011