| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,781,405 – 15,781,483 |
| Length | 78 |
| Max. P | 0.758609 |
| Location | 15,781,405 – 15,781,483 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 82.69 |
| Shannon entropy | 0.31585 |
| G+C content | 0.50427 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15781405 78 - 22422827 UUUGAAACCAACUUUUCGCAUCUUGUUAUCGGUGUGAAACGCCCGAAAUCGCGGCCACCAGUGGAGACUGGCCGCUAC .............(((((((((........)))))))))...........(((((((.....(....))))))))... ( -23.80, z-score = -1.66, R) >droSim1.chrX_random 42232 78 - 5698898 UUUGAAACCAACUUUUCGCAUCUUGUUAUCGGUGUGAAACGCCCGAAAUCGCGGCCACCAGUGGAGACUGGCCGCUGU .............(((((((((........)))))))))...........(((((((.....(....))))))))... ( -23.80, z-score = -1.23, R) >droSec1.super_37 358152 78 - 454039 UUUGAAACCAACUUUUCGCAUCUUGUUAUCGGUGUGAAACGCCCGAAAUCGCGGCCACCAGUGGAGACUGACCGCUGU .............(((((((((........))))))))).(((((....)).)))...((((((.......)))))). ( -22.80, z-score = -1.54, R) >droYak2.chrX 9972571 72 - 21770863 ------CCUAACUAUUUGCAUCUUGAUAUCGAUGUGAAACGCCUAAAAUCGCGGACACCAGUGGAGAUAGUCCACUGU ------........((..((((........))))..)).(((........))).....(((((((.....))))))). ( -19.40, z-score = -2.60, R) >droEre2.scaffold_4690 7482089 78 + 18748788 UUCGGCUCUAACUCCUCGCAUCUUGCUAUCGAUGUGAAACGCCUGAAAUCGCGGAUACCAGUGGAGACUGUCUACGCU ..((((((((.....(((((((........)))))))..(((........)))........))))).)))........ ( -18.30, z-score = -0.40, R) >consensus UUUGAAACCAACUUUUCGCAUCUUGUUAUCGGUGUGAAACGCCCGAAAUCGCGGCCACCAGUGGAGACUGGCCGCUGU ..............((((((((........)))))))).(((........))).....((((((.......)))))). (-16.58 = -16.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:50 2011