| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,476,950 – 11,477,005 |
| Length | 55 |
| Max. P | 0.731587 |
| Location | 11,476,950 – 11,477,005 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 82.62 |
| Shannon entropy | 0.30639 |
| G+C content | 0.37388 |
| Mean single sequence MFE | -10.44 |
| Consensus MFE | -8.08 |
| Energy contribution | -7.60 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11476950 55 + 23011544 UGAUUUUUUU-AGGCAAUGACAGCUGAAAUGGUUGUCUCUGCUCCGACUUAAUACG ..........-.((((..(((((((.....)))))))..))))............. ( -13.50, z-score = -2.38, R) >droEre2.scaffold_4929 12684606 51 - 26641161 -----UUUUUUCGGCAAUGAUAGUUCAAAUGGUUAUCUCCGUUCCGACCUAAUACG -----.....((((...(((....)))(((((......)))))))))......... ( -7.80, z-score = -0.71, R) >droYak2.chr2L 7878991 53 + 22324452 -UUUUUUUUUUAGGCA--GACAGUUCAAAUGAUUGUCUUCGUUUCGACUUAAUACG -...........((.(--(((((((.....))))))))))................ ( -7.40, z-score = -0.92, R) >droSec1.super_3 6872146 55 + 7220098 UGAUUUUUUU-AGGCAAUGACAGCUGAAAUGGUUGUCUCUGUUUCGACUUAAUACG ..........-(((((..(((((((.....)))))))..)))))............ ( -11.50, z-score = -1.64, R) >droSim1.chr2L 11290297 56 + 22036055 UGAUUUUUUUUAGGCACUGACAGCUGAAAUGGUUGUCUCUGUUCCGACUUAAUACG ............((.((.(((((((.....)))))))...)).))........... ( -12.00, z-score = -1.74, R) >consensus UGAUUUUUUUUAGGCAAUGACAGCUGAAAUGGUUGUCUCUGUUCCGACUUAAUACG ............((((..(((((((.....)))))))..))))............. ( -8.08 = -7.60 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:45 2011