| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,769,679 – 15,769,771 |
| Length | 92 |
| Max. P | 0.831560 |
| Location | 15,769,679 – 15,769,771 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 68.37 |
| Shannon entropy | 0.54098 |
| G+C content | 0.32946 |
| Mean single sequence MFE | -16.86 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.84 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15769679 92 + 22422827 UUCUAGUUGGAAUCC--AGCGUUGGCU---AAAUUUCUACUCUUGAAUGACUAAGAAUCGAACCAAUCGAUUCUAAUUGGAAAAACACUCAAGGUUC- ((((((((((((((.--...(((((.(---..(((..((.((......)).))..)))..).))))).))))))))))))))...............- ( -21.60, z-score = -2.15, R) >droSim1.chrX 12200468 86 + 17042790 UUCUAAUUGGAAUCCUAAAUGUAUACUCUUGAAUUUCU-----------ACUAAGAAUCCAAACAAUCGAUUCUAAUUGG-AAAAUCACUGAAGGUUU ((((((((((((((............(((((.......-----------..)))))............))))))))))))-))............... ( -15.85, z-score = -1.87, R) >droSec1.super_37 346470 87 + 454039 UUCUAAUUGGAAUCCUUAAUGUAUACUCUUGAAUUUCU-----------ACUAAGAAUCCGAACAAUCGAUUCUAAUUCACAAAAUCACUGAAGGUUU ((((....)))).((((...((.......((((((...-----------....((((((.((....)))))))))))))).......))..))))... ( -10.55, z-score = -0.06, R) >droYak2.chrX 9961187 93 + 21770863 UUCUAGUUGGAAUCC--AGCGUUUGCUACAAAAUUUAUACUCUUGAAUAACUAACAGUCCAACUG-UCGAUUCUGAUUGGAGAAAACUUAAGGUUU-- (((((((..(((((.--(((....))).....(((((......))))).....((((.....)))-).)))))..)))))))..............-- ( -19.40, z-score = -1.36, R) >droEre2.scaffold_4690 7470363 93 - 18748788 UUCUAGUUGGAAUCC--AGCGUUUGCUAUGAAAUUUCUAUUCUUGAAUAACUAACAAUCCAACUG-UCGAUUCUAAUUGGAGACAAAGCAAGAGAU-- ((((((((((((((.--(((....))).......(((.......)))..................-..))))))))))))))..............-- ( -16.90, z-score = -0.45, R) >consensus UUCUAGUUGGAAUCC__AGCGUUUGCUAUUAAAUUUCUA_UCUUGAAU_ACUAAGAAUCCAACCAAUCGAUUCUAAUUGGAAAAAACACAAAAGGU__ ((((((((((((((......................................................))))))))))))))................ ( -9.68 = -9.84 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:49 2011