| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,755,004 – 15,755,107 |
| Length | 103 |
| Max. P | 0.991703 |
| Location | 15,755,004 – 15,755,107 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.96 |
| Shannon entropy | 0.46136 |
| G+C content | 0.36216 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -17.72 |
| Energy contribution | -19.06 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15755004 103 - 22422827 UCGAUUUUCCGUCCCGUCUGAUUUGUAAUUAG-GAUGUUGGGCGUUUUGUUUAAUAC---AGAAUGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAAGAGGAA ........((((((((((((.....((((...-...))))((((((((((.....))---))))))))......))))))))))))..................... ( -29.10, z-score = -2.45, R) >droEre2.scaffold_4690 7455639 100 + 18748788 UCGCUUUUCCGUCCCGUCUGAUUUGUAAUUAG-GAUGUUGGGCGUUUUGUUUAAUACAGAAGAAAGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAA------ ........((((((((((((.((((((..(((-((((.....))))))).....))))))(((......)))..))))))))))))...............------ ( -27.00, z-score = -2.15, R) >droYak2.chrX 9946499 99 - 21770863 -CGCUUUUCUGUCCCGUCUGAUUUGUAAUUGG-GAUGUUGGGCGUUUUGUUUAAUAC---AGAAUGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAAAAU--- -.......((((((((((((.........(((-((((....(((((((((.....))---))))))))))))))))))))))))))..................--- ( -28.80, z-score = -3.54, R) >droSec1.super_37 331636 102 - 454039 UCGCUUUUCCGUCCCGUCUGAUUUGUAAUUAG-GAUUUUGGGCGUUUUGUUUAAUAC---AGAACGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAAAGAAA- ........((((((((((((...........(-(((....((((((((((.....))---))))))))))))..))))))))))))....................- ( -30.02, z-score = -2.95, R) >droSim1.chrX_random 34187 102 - 5698898 UCGCUUUUCCGUCCCGUCUGAUUUGUAAUUAG-GAUGUUGGGCGUUUUGUUUAAUAC---AGAAUGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAAAGAAA- ........((((((((((((.....((((...-...))))((((((((((.....))---))))))))......))))))))))))....................- ( -29.10, z-score = -2.89, R) >droVir3.scaffold_13036 973338 88 - 1135500 --------UUGACACUUUUGGUCUAUAAUAAAUAAUGCAGAACUUAUUAAUUGAAU----UGAAAG-------GCGAUAGGAAAAAUAUGCUCACAAAAAUCCUCAG --------(((...((((..((...((((.(((((........))))).)))).))----..))))-------.))).((((..................))))... ( -7.37, z-score = 1.22, R) >consensus UCGCUUUUCCGUCCCGUCUGAUUUGUAAUUAG_GAUGUUGGGCGUUUUGUUUAAUAC___AGAAUGUUAUCUCGCGGAUGGGAUGGUAUACUAAAAAAAAAAAA_A_ ........((((((((((((....(((((......((((((((.....)))))))).........)))))....))))))))))))..................... (-17.72 = -19.06 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:45 2011