Locus 14834

Sequence ID dm3.chrX
Location 15,742,217 – 15,742,317
Length 100
Max. P 0.567712
window20427

overview

Window 7

Location 15,742,217 – 15,742,317
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.90
Shannon entropy 0.10635
G+C content 0.40200
Mean single sequence MFE -25.44
Consensus MFE -22.54
Energy contribution -22.78
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.15
SVM RNA-class probability 0.567712
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15742217 100 + 22422827
GCUUGUAAGCGUAGUUAGAAACUUUGGGAACAAAGUUAGAUACAUAAACUGUCGUUGAGUUUAAUGCGAACGCUGGGAUAAUUUGGGUUUUGUCUGCCGC
((.....(((((.((....(((((((....)))))))....)).((((((.......))))))......))))).((((((........))))))))... ( -22.50, z-score =  -0.16, R)
>droYak2.chrX 9933621 100 + 21770863
GCCGGAAAGCGUAGUUAGAAACUUUGGAAACAAAGUUAGAUACAUAAACUUUCGUUGAGUUUUAUGUGAACGCUGGGAUAAAUUGGGUUUUGUCUGCCGC
..(((..(((((.......(((((((....)))))))...(((((((((((.....))).)))))))).))))).(((((((......))))))).))). ( -31.10, z-score =  -3.43, R)
>droEre2.scaffold_4690 7442771 100 - 18748788
GCUUGAAAGCGUAGUUAGAAACUUUGAAAACAAAGUUAGAUACGUAAACUUUCGUUGAGUAUUAUGUGAACGCUGGGAUAAAUUGGGUUUUGUCUGCCGC
((.....(((((.......(((((((....)))))))...(((((((((((.....)))).))))))).))))).(((((((......)))))))))... ( -24.10, z-score =  -1.47, R)
>droSim1.chrX_random 20465 100 + 5698898
GCUCGUAAGCGUAGUUAGAAACUUUGGGAACAAAGUUAGAUACAUAAACUGUCGUUGAGUUUAAUGUGAACGCUGGGAUAAUUUGGGUUUUGUCUGCCGC
((.....(((((.......(((((((....)))))))...((((((((((.......))))).))))).))))).((((((........))))))))... ( -24.50, z-score =  -0.95, R)
>droSec1.super_37 318670 100 + 454039
GCACGUAAGCGUAGUUAGAAACUUUGGGAACAAAGUUAGAUACAUAAACUGUCGUUGAGUUUAAUGUGAACGCUGGGAUAAUUUGGGUUUUGUCUGCCGC
((.....(((((.......(((((((....)))))))...((((((((((.......))))).))))).))))).((((((........))))))))... ( -25.00, z-score =  -1.10, R)
>consensus
GCUCGUAAGCGUAGUUAGAAACUUUGGGAACAAAGUUAGAUACAUAAACUGUCGUUGAGUUUAAUGUGAACGCUGGGAUAAUUUGGGUUUUGUCUGCCGC
((.....(((((.......(((((((....)))))))...((((((((((.......))))).))))).))))).((((((........))))))))... (-22.54 = -22.78 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:43 2011