| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,740,795 – 15,740,946 |
| Length | 151 |
| Max. P | 0.985202 |
| Location | 15,740,795 – 15,740,946 |
|---|---|
| Length | 151 |
| Sequences | 5 |
| Columns | 159 |
| Reading direction | forward |
| Mean pairwise identity | 88.58 |
| Shannon entropy | 0.19136 |
| G+C content | 0.30433 |
| Mean single sequence MFE | -27.76 |
| Consensus MFE | -26.32 |
| Energy contribution | -26.08 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15740795 151 + 22422827 AUAUAUAUAUAUAUAUCAUUUAUAUUUCCGAUCGCAUUGAUCGGCCACAUUCUCUCGCACUUUUGUGUAUCUCCAUA--------UAUCUUCAGUUUUUUAAAACAAUAAAUUGUAUAUAACUAUUGCAGUUUGGCACUAUAGGACUGCAACAUAUUUG .........(((((((.((((((....((((((.....))))))............((((....)))).........--------........((((....)))).)))))).)))))))....(((((((((.........)))))))))........ ( -28.40, z-score = -2.40, R) >droYak2.chrX 9932265 148 + 21770863 --------AUUUAUAUCAUUUAUAUUUCCGAUUGUAUUGAUCGGCCACAUUCUCUCGCACUGUUGUGUAUCUCCAUACAAACAUAUAUCUUCAGUUUUUU---ACAAUAAAUUGUAUAUAACUAUGGCAGCUUGGCACUAUAGAGCUGCAACAUAUUUG --------............(((((..((((((.....))))))............((((....))))..............))))).....((((...(---((((....)))))...))))...(((((((.........))))))).......... ( -25.60, z-score = -0.70, R) >droEre2.scaffold_4690 7441404 139 - 18748788 ----------AUAUAUCAUUUAUAUUUCCGAUCGUAUUGAUCGGCCACAUUCUCUCGCACUUUUGUGUAUCUCCAUA--------UAUCUAAAAUUUUUUCA--CAAUAAAUUGUAUAUAACUAUGGCAGUUUGGCACUAUAGAGCUGCAACAUAUUUG ----------((((((.((((((....((((((.....))))))............((((....)))).........--------.................--..)))))).))))))...(((((((((((.........)))))))..)))).... ( -25.50, z-score = -1.88, R) >droSim1.chrX_random 19056 151 + 5698898 AUAUAUAUAUAUAUAUCAUUUAUAUUUCCGAUCCCAUUGAUCGGCCACAUUCUCUCGCACUUUUGUGUAUCUCCAUA--------UAUCUUCAGUUUUUUUAAACAAUAAAUUGUAUAUAAAUAUUGCAGUUUGGCACUAUAGAGCUGCAACAAAUUUG .....(((.(((((((.((((((....((((((.....))))))............((((....)))).........--------........((((....)))).)))))).))))))).)))(((((((((.........)))))))))........ ( -29.50, z-score = -3.13, R) >droSec1.super_37 317245 151 + 454039 AUAUAUAUAUAUAUAUCAUUUAUAUUUCCGAUCGCAUUGAUCGGCCACAUUCUCUCGCACUUUUGUGUAUCUCCAUA--------UAUCUUCAGUUUUUUUAAACAAUAAAUUGUAUAUAAAUAUUGCAGUUUGGCACUAUAGAGCUGCAACAAAUUUG .....(((.(((((((.((((((....((((((.....))))))............((((....)))).........--------........((((....)))).)))))).))))))).)))(((((((((.........)))))))))........ ( -29.80, z-score = -2.71, R) >consensus AUAUAUAUAUAUAUAUCAUUUAUAUUUCCGAUCGCAUUGAUCGGCCACAUUCUCUCGCACUUUUGUGUAUCUCCAUA________UAUCUUCAGUUUUUUUAAACAAUAAAUUGUAUAUAACUAUUGCAGUUUGGCACUAUAGAGCUGCAACAUAUUUG .........(((((((.((((((....((((((.....))))))............((((....))))......................................)))))).)))))))......(((((((.........))))))).......... (-26.32 = -26.08 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:42 2011