| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,735,083 – 15,735,134 |
| Length | 51 |
| Max. P | 0.572144 |
| Location | 15,735,083 – 15,735,134 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.45915 |
| G+C content | 0.34674 |
| Mean single sequence MFE | -9.63 |
| Consensus MFE | -6.47 |
| Energy contribution | -7.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15735083 51 - 22422827 AUAUGG---GUUACUGGCU----GUGCUUUGGCUAAAUAAAUCACUGUUUAAUAUAAC .....(---(((..(((((----(.....))))))....))))............... ( -4.90, z-score = 0.80, R) >droSim1.chrX 12086490 58 - 17042790 AUAUGGAAUGUUUCCAUCCUUUGGAACAUUAGCCAUGUUCGCUGUUGUUUAAUAUUGC ((((((.(((((.(((.....))))))))...)))))).................... ( -12.00, z-score = -1.41, R) >droSec1.super_37 173567 58 - 454039 AUAUGGAAUGUUUCCAUCCUUUGGAACAUUAGCCAUGUUCGCUGUUCUUUAAUAUAAC ((((((.(((((.(((.....))))))))...)))))).................... ( -12.00, z-score = -2.14, R) >consensus AUAUGGAAUGUUUCCAUCCUUUGGAACAUUAGCCAUGUUCGCUGUUGUUUAAUAUAAC ((((((.((((.((((.....))))))))...)))))).................... ( -6.47 = -7.03 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:41 2011