Locus 14830

Sequence ID dm3.chrX
Location 15,716,174 – 15,716,294
Length 120
Max. P 0.743174
window20420

overview

Window 0

Location 15,716,174 – 15,716,294
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Shannon entropy 0.06887
G+C content 0.41503
Mean single sequence MFE -28.10
Consensus MFE -26.90
Energy contribution -26.23
Covariance contribution -0.66
Combinations/Pair 1.06
Mean z-score -1.30
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.56
SVM RNA-class probability 0.743174
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15716174 120 + 22422827
AAAAAAAAACAUCAAUGUGCCGGAGGAACCUCUGGCCCAGCUUCUCCAGUCUCAACAGAUUUGAAAUUGCUCAAAGAGGUGUCUUAGAUUAUUGUGCUGUUCGAUGUUAUGCCAACAUCC
.......((((((.....(((((((....))))))).((((......(((((..((...(((((......)))))...)).....))))).....))))...))))))............ ( -30.40, z-score =  -1.46, R)
>droSec1.super_37 297134 120 + 454039
AAAAAAAAACAUCAAUGUGCCGAAGGAACCUCUGACCCAGCUUCUCCAGUCUCAACAGAUUUGAAAUCGCUCAAAGAGGUGUCUUAGAUUAUUGUGCUGUUCGAUGAUAUGUCAUCAUCC
.......((((.(((((.....(((..((((((.....(((...((.(((((....))))).))....)))...))))))..)))....)))))...)))).(((((....))))).... ( -25.80, z-score =  -0.80, R)
>droSim1.chrU 78115 119 + 15797150
AAAAAAAAACAUCAAUG-GCCGAAGGAACCUCUGACCCAGCUUCUCCAGUCUCAACAGAUUUGAAAUCGCUCAAAGAGGUGUCUUAAAUUAUUGUGCUGUUCGAUGAUGUGUCAUCAUCC
.......((((.(((((-(...(((..((((((.....(((...((.(((((....))))).))....)))...))))))..)))...))))))...)))).(((((((...))))))). ( -28.10, z-score =  -1.65, R)
>consensus
AAAAAAAAACAUCAAUGUGCCGAAGGAACCUCUGACCCAGCUUCUCCAGUCUCAACAGAUUUGAAAUCGCUCAAAGAGGUGUCUUAGAUUAUUGUGCUGUUCGAUGAUAUGUCAUCAUCC
.......((((.(((((.....(((..((((((.....(((...((.(((((....))))).))....)))...))))))..)))....)))))...)))).((((((.....)))))). (-26.90 = -26.23 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:37 2011