| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,712,785 – 15,712,882 |
| Length | 97 |
| Max. P | 0.801472 |
| Location | 15,712,785 – 15,712,882 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 88.97 |
| Shannon entropy | 0.14993 |
| G+C content | 0.30483 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.73 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15712785 97 - 22422827 AUAGACUCUAUUAUAUUACUAGGCAAGCCAGACUGCAAUGGUUUUUCAAUUCG-AAAAUAGUACUUUUCAAUUGACAAAUAGUAUUGUAGUGCUGAUA ............................((((((((((((((((.((((((.(-((((......))))))))))).))))..))))))))).)))... ( -20.50, z-score = -1.46, R) >droSim1.chrX_random 4072572 94 - 5698898 AAAGACUCAAUUA--UUACUAGGCAAGCCAGACUGCAAUGGUUUUUCAAUUCG-AAAAAAGUAUUUUCCAAUUGA-AAAUAGUAUUGUAGUGUUGACA ......(((((..--...((.((....))))(((((((((.((((((((((.(-((((.....))))).))))))-))).).)))))))))))))).. ( -24.00, z-score = -3.33, R) >droSec1.super_37 293857 91 - 454039 AAAGACUCAAUUA------UAGGCAAGCCAUACUGCAAUGGUUUUUCAAUUCGAAAAAAAGUAUUUUCCAAUUGA-AAAUAGUAUUGUAGUGCUGAUA ......(((....------..((....)).((((((((((.((((((((((.(((((......))))).))))))-))).).)))))))))).))).. ( -23.20, z-score = -3.56, R) >consensus AAAGACUCAAUUA__UUACUAGGCAAGCCAGACUGCAAUGGUUUUUCAAUUCG_AAAAAAGUAUUUUCCAAUUGA_AAAUAGUAUUGUAGUGCUGAUA .....................((....))..(((((((((((((.((((((.(.((((.....)))).))))))).))))..)))))))))....... (-14.40 = -14.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:35 2011