| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,708,440 – 15,708,551 |
| Length | 111 |
| Max. P | 0.794095 |
| Location | 15,708,440 – 15,708,551 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.98 |
| Shannon entropy | 0.25095 |
| G+C content | 0.46674 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -21.59 |
| Energy contribution | -22.65 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15708440 111 - 22422827 CGGGUGACUUUCUCAAAUGAAAACCCGCCAUGCAUGUGCAUGUGCUUUGCAUUGAGAACCCACGAGG--AAAGUCACCAAAGAAAAACCAGAGAUCGACAAACUUUUGGGCGC ..((((((((((((((.((.(((...(((((((....))))).))))).))))))))..((....))--.)))))))).........((((((..........)))))).... ( -31.10, z-score = -1.67, R) >droSec1.super_37 289625 111 - 454039 CGGGUGACUUUCUCAAAUGAAAACCCGCCAUGCAUGUGCAUGUGCUUUGCAUUGAGAACCCACGAGG--AAAGUCACCAAAGAAAAACCAGAGAUCGACAAACUUUUGGGCGG ((((((((((((((((.((.(((...(((((((....))))).))))).))))))))..((....))--.)))))))).........((((((..........)))))).)). ( -31.70, z-score = -1.71, R) >droYak2.chrX 9907434 111 - 21770863 UGGGUGACUUUCUCAAAUGGAAACUCUCCAUGCAUGUGCUU-UGCAUUGAGAACCGAACCCACGAGGAAAAAGUCACCAAACAAAAACCAGAGAUCGAGAAAC-UUUGGGUGG ..((((((((((((....(....)((((.(((((.......-))))).))))...........)))))...)))))))...((....((((((.........)-))))).)). ( -33.80, z-score = -2.53, R) >droEre2.scaffold_4690 7414627 104 + 18748788 CGGGUGACUUUCUCAAAUGGAAACUCUCCAUGCAUGUGCUU-UGCAUUGAGAACC-------CAAGAGGAAAGUCACCAAAGACAAACCAGAGAUCGACAAAC-UUUGGGUGG ..(((((((((((....(((....((((.(((((.......-))))).))))..)-------))...))))))))))).........((((((.........)-))))).... ( -35.50, z-score = -3.19, R) >consensus CGGGUGACUUUCUCAAAUGAAAACCCGCCAUGCAUGUGCAU_UGCAUUGAAAACAGAACCCACGAGG__AAAGUCACCAAAGAAAAACCAGAGAUCGACAAAC_UUUGGGCGG ..((((((((((((....(....)..((.((((((......)))))).)).............))))...)))))))).........((((((..........)))))).... (-21.59 = -22.65 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:32 2011