| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,706,512 – 15,706,602 |
| Length | 90 |
| Max. P | 0.671923 |
| Location | 15,706,512 – 15,706,602 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 87.29 |
| Shannon entropy | 0.21059 |
| G+C content | 0.42993 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.14 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15706512 90 + 22422827 -----------CUCG-CCCCCCUUUUUUUUUUGCUUCGUACAGCC-GUGAGCGGCUGUAAAAGUGUGCGUGGGUUUUUAAGAUUAUUAAAAGCGAUUUUCAUU -----------.(((-(..(((.........(((((..(((((((-(....)))))))).))))).....))).((((((.....))))))))))........ ( -24.54, z-score = -2.06, R) >droEre2.scaffold_4690 7412744 101 - 18748788 CCCACUGUAUUCAGCGCCCCCCUUUUUUUUU-GCUUCGUACAGCC-GUCAGCGGCUGUAAAAGUGUGCGUGGGUUUUUAAGAUUAUUAAAAGCGAUUUUCAUU .((((((....))((((..............-((((..(((((((-(....)))))))).))))))))))))((((((((.....)))))))).......... ( -28.93, z-score = -2.98, R) >droYak2.chrX 9905382 102 + 21770863 CCCACUGAAUUCAGCGCCCCCCUUUUUUUUUUGCUUCGUACAGCC-GUGAGCGGCUGUAAAAGUGUGCGUGGGUUUUUAAGAUUAUUAAAAGCGAUUUUCAUU .((((((....))((((...............((((..(((((((-(....)))))))).))))))))))))((((((((.....)))))))).......... ( -29.46, z-score = -2.69, R) >droSec1.super_37 287470 90 + 454039 -----------CUCGUCCCCCUUUUUUUUUUUGCUUCGUACAGCCCGUGAGCGGCUGUAAAAGUGUGCGUGGGUUUUUAAGAUUAUUAAAAGCGAUUUUCA-- -----------.((((..(((..........(((..(.((((((((....).)))))))...)...))).))).((((((.....))))))))))......-- ( -22.50, z-score = -1.67, R) >droSim1.chrX_random 4065454 89 + 5698898 -----------CUCGCCCCCCCUUUUUUUUUUGCUUCGUACAGCC-GUGAGCGGCUGUAAA-GUGUGCGUGGGUUUU-AAGAUUAUUAAAAGCGAUUUUCAUU -----------.((((...(((.........(((....(((((((-(....))))))))..-....))).)))((((-((.....))))))))))........ ( -24.20, z-score = -2.04, R) >consensus ___________CUCGGCCCCCCUUUUUUUUUUGCUUCGUACAGCC_GUGAGCGGCUGUAAAAGUGUGCGUGGGUUUUUAAGAUUAUUAAAAGCGAUUUUCAUU ................................((..(.(((((((.(....))))))))...)...))....((((((((.....)))))))).......... (-16.94 = -17.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:30 2011