| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,705,581 – 15,705,699 |
| Length | 118 |
| Max. P | 0.641880 |
| Location | 15,705,581 – 15,705,699 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.39 |
| Shannon entropy | 0.42320 |
| G+C content | 0.49130 |
| Mean single sequence MFE | -32.82 |
| Consensus MFE | -18.38 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15705581 118 + 22422827 AGUCUGCUAGCUGGAGAUCGCAGUCAC-ACACAGAUCC-AUUGAUCUGAUAAAGGACAUGACUUCCGUUGCAAAAUUGUGCCCAGAGUUAUGGCACCCGAAAGCCAAAAGCAAAAGGCUU ....(((.(((.((((.(((..(((..-...((((((.-...))))))......))).))).)))))))))).....(((((.........)))))....(((((..........))))) ( -30.00, z-score = -0.56, R) >droEre2.scaffold_4690 7411869 101 - 18748788 AGUCUGCUAGCUGG-GGUCACAG-----AUCCAAACC------AUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAAGCCAAAAGCUU------- ........((((.(-((((.(((-----((.......------)))))......)))))(((((..((..((....))..))..))))).((((........))))..)))).------- ( -27.90, z-score = -0.55, R) >droYak2.chrX 9904214 94 + 21770863 --------------------GGUCUGUUGCACAGAUCCGAACCAUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAAGCCAGAAGACUU------ --------------------(((((.(((..(((((.......))))).))).)))))((((((..((..((....))..))..))))))((((........))))........------ ( -27.30, z-score = -1.63, R) >droSec1.super_37 286518 119 + 454039 AGUCUGCUAGCUGGAGGUCACAGUCACCACACAGAUCC-AUCGAUCUGAUUAAGGACCUGACUUCCGUUGCAAAAUUGUGGCCAGAGUUAUGGCACCCGAAAGCCAAAAGCAAAAGGCUU ((((((((((((((((((((..(((......((((((.-...))))))......))).))))))))((..((....))..))...)))).((((........))))..)))...))))). ( -38.90, z-score = -2.39, R) >droSim1.chrX_random 4064499 119 + 5698898 AGUGUGCUAGCUGGAGGUCACAGUCACCACACAGAUCC-AUCGAUCUGAUAAAGGACCUGACUUCCGUUGCAAAAUUGUGGCCAGAGUUAUGGCACCCGAAAGCCAAAAGCAAAAGGCUU .(.(((((((((((((((((..(((......((((((.-...))))))......))).))))))))((..((....))..))...)))..)))))).)..(((((..........))))) ( -40.00, z-score = -2.70, R) >consensus AGUCUGCUAGCUGGAGGUCACAGUCAC_ACACAGAUCC_AUCGAUCUGAUAAAGGACCUGACUUCCGUUGCAAAAUUGUGGCCAGAGUUAUGGCACCCGAAAGCCAAAAGCAAAAGGCUU .........(((...................((((((.....))))))..........((((((..(..(((....)))..)..))))))((((........))))..)))......... (-18.38 = -19.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:29 2011