| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,699,082 – 15,699,194 |
| Length | 112 |
| Max. P | 0.903873 |
| Location | 15,699,082 – 15,699,194 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 84.41 |
| Shannon entropy | 0.25965 |
| G+C content | 0.44435 |
| Mean single sequence MFE | -31.76 |
| Consensus MFE | -21.77 |
| Energy contribution | -25.50 |
| Covariance contribution | 3.73 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15699082 112 + 22422827 AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCUAAGUUUACAUAUAGAGAGCGUGGAGUGGAUUGGGAUUGGAUAGUGUUGGAUUGGAUAGUAUCCCUAUCCGAUUCGCGCCGU----- ((.(((((.((..((..(((((.((((((.........))))))..)))))..)).)).))))).))......((((.(((((((((((.....)))))))))))))))...----- ( -37.60, z-score = -3.02, R) >droEre2.scaffold_4690 7405257 101 - 18748788 AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCUAAGUUUACAUAUAGAGAG------------UGGAUAUGGAUAGUGU-GGUCUG--UAGUAUCC-UAUCCGAUUCGCGCCGUUAUUU ..((..(((((((((((((........))).)))))))))).....(((------------((((((.(((((.((.-......--)).)))))-))))).)))))).......... ( -26.70, z-score = -1.57, R) >droYak2.chrX 9897978 91 + 21770863 AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCUAAGUUUACAUACAGAGAG------------------UGGAUAGUGUGGUUUC---UAGUAUCCCUAUCCGAUUCGCGCCGU----- ..((..(((((((((((((........))).)))))))))).....(((------------------(((((((.(.(((...---....)))))))))).)))))).....----- ( -23.30, z-score = -1.38, R) >droSec1.super_37 279655 110 + 454039 AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCCAAGUUUACAUAUAGAGAG--UGGAGUGGAUUGGGAUUGGAUAGUGUUGGAUUGGAUAGUAUCCCUAUCCGAUUCGCGCCGU----- ......(((((((((((.((........)))))))))))))........--.((.((((((((((...(((((.((((......)))).)))))...)))))))))).))..----- ( -36.30, z-score = -2.98, R) >droSim1.chrX_random 5301 110 + 5698898 AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCUAAGUUUACAUAUAGAGAG--UGGAGUGGAUUGGGAUUGGAUAGUGUUGGAUUGGAUAGUAUCCCUAUCCGAUUCGCGCCGU----- ......(((((((((((((........))).))))))))))........--.((.((((((((((...(((((.((((......)))).)))))...)))))))))).))..----- ( -34.90, z-score = -2.71, R) >consensus AUGCCAGUGUAAAUUUGCGUUCGUGUGUGCUAAGUUUACAUAUAGAGAG__UGGAGUGGAUUGGGAUUGGAUAGUGUUGGAUUGGAUAGUAUCCCUAUCCGAUUCGCGCCGU_____ ..((..(((((((((((((........))).))))))))))..............((((((((((...(((((.((((......)))).)))))...))))))))))))........ (-21.77 = -25.50 + 3.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:28 2011