Locus 14819

Sequence ID dm3.chrX
Location 15,697,362 – 15,697,454
Length 92
Max. P 0.879758
window20402

overview

Window 2

Location 15,697,362 – 15,697,454
Length 92
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 90.65
Shannon entropy 0.12836
G+C content 0.42239
Mean single sequence MFE -29.20
Consensus MFE -23.34
Energy contribution -23.57
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -2.35
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.04
SVM RNA-class probability 0.879758
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15697362 92 - 22422827
UGGGUGCAUUGUACCUCCAGUCGAUUUGAUUGGUGAACCAAACUGGUUAUAUUU-UAGCCAGUGAUAAGGGGUUUUCGGAUCUGGACAAAGCA
.((((((...))))))...((((((((((((((....))))((((((((.....-))))))))............)))))))..)))...... ( -28.50, z-score =  -1.87, R)
>droSec1.super_37 277980 92 - 454039
UGAGUGCAUUGAACCUCUAGUCUAUUUGAUAGGUGAACCAAACUGGUUAUAUUC-UAGCCGGUGAUAAGGGGUUUUCAGCUCUGCACAAAUCA
...(((((((((((((((.(((.........((....))..((((((((.....-))))))))))).))))))..))))...)))))...... ( -30.30, z-score =  -3.04, R)
>droSim1.chrX_random 3646 93 - 5698898
UGGGUGCAUUGAACCUCUAGUCUAUUUGAUAGGUGAACCAAACUGGUUAUAUUCUUAGCCGGUGAUAAGGGGUUUUCGGAUCUGGACAAUUCA
.((((.(...((((((((.(((.........((....))..((((((((......))))))))))).))))))))..).)))).......... ( -28.80, z-score =  -2.13, R)
>consensus
UGGGUGCAUUGAACCUCUAGUCUAUUUGAUAGGUGAACCAAACUGGUUAUAUUC_UAGCCGGUGAUAAGGGGUUUUCGGAUCUGGACAAAUCA
..((......((((((((.(((.........((....))..((((((((......))))))))))).))))))))......)).......... (-23.34 = -23.57 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:22 2011