| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,690,652 – 15,690,728 |
| Length | 76 |
| Max. P | 0.530330 |
| Location | 15,690,652 – 15,690,728 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.32737 |
| G+C content | 0.60747 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -15.18 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15690652 76 + 22422827 CCACAGCCAAUUAUGGAGCCAGUGAUGAGGCGUCCCCCUCCAUUGCCAACAAACUGGCCCACUUAAAGGAGGCGAU .....(((.....(((.((((((.....((((...........)))).....)))))))))((....)).)))... ( -23.40, z-score = -1.64, R) >droSim1.chrX 12168223 62 + 17042790 CCACCGCCGACUAUGGGGCCAGCGAUGAGGCGUCCACCUCCAUUGCCAACAAACUGGCCCAC-------------- ...............(((((((((((((((......))).))))))........))))))..-------------- ( -20.90, z-score = -1.66, R) >droSec1.super_37 270319 62 + 454039 CCACCGGCGACUAUGGAGCCAGCGAUGAGGCGUCCACCUCCAUUGCCAACAAACUGGCCCAC-------------- .............(((.(((((((((((((......))).))))))........))))))).-------------- ( -17.80, z-score = -1.06, R) >droYak2.chrX 9889117 76 + 21770863 CAACCGCCGACUACGGAUCCAGCGAUGAGGCGGCCACCUCGAUUGCCAACAAACUGGCCCACUUGAAGGAGGCACU ....((((..(....)(((....)))..))))(((.((((((..((((......))))....))).))).)))... ( -22.60, z-score = -1.33, R) >droEre2.scaffold_4690 7395984 76 - 18748788 CCAACGCCGACUAUGGAGCCAGCGAUGAGGCGGCCACCUCCAUUGCCAACAAACUGGCCCACUUGAAGGAGGCACU .....(((..((.(((.(((((((((((((......))).))))))........))))))).....))..)))... ( -24.60, z-score = -1.52, R) >consensus CCACCGCCGACUAUGGAGCCAGCGAUGAGGCGUCCACCUCCAUUGCCAACAAACUGGCCCACUU_AAGGAGGC__U ..............((.(((((((((((((......)))).)))))........))))))................ (-15.18 = -15.22 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:20 2011