| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,683,439 – 15,683,539 |
| Length | 100 |
| Max. P | 0.993084 |
| Location | 15,683,439 – 15,683,539 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Shannon entropy | 0.25014 |
| G+C content | 0.43996 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -19.02 |
| Energy contribution | -19.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.993084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15683439 100 + 22422827 ------UCUAUGUC--UAUUCCUCCCCCUCCGAUCGCGAGCAAUCCGAUAAAACACUGUAUUUAUGCUUUGCAUUCUGCGAUCUCAUGAAUACGUGAAAUCAACAUCG-------- ------...((((.--.(((............((((.((....))))))....(((.(((((((((..((((.....))))...)))))))))))).)))..))))..-------- ( -21.40, z-score = -3.27, R) >droSim1.chrX 12165410 108 + 17042790 ------UCUAUGUC--UAUUCCUCCCCCUCCGAUCGCGAGCGAUCCGAUAAAACACUGUGUUUAUGCUUUGCAUUCUGCGAUCUCAUGAAUACGUGAAAUCAACAUCGAAAUCUCC ------((.((((.--.(((........((.(((((....))))).)).....(((.(((((((((..((((.....))))...)))))))))))).)))..)))).))....... ( -25.10, z-score = -3.30, R) >droSec1.super_37 267508 100 + 454039 ------ACUAUGUA--UAUUCCUCCCCCUCCGAUCGCGAGCGAUCCGAUAAACCACUGUGUUUAUGCUUUGCAUUCUGCGAUCUCAUGAAUACGUGAAAUCAACAUCG-------- ------...((((.--............((.(((((....))))).)).....(((.(((((((((..((((.....))))...))))))))))))......))))..-------- ( -23.70, z-score = -3.28, R) >droYak2.chrX 9886398 112 + 21770863 UCUAUGGCUAUUCCACUAUUCCUCCCCCUCCGAACGCAAGCGAUCCGAUAAAAGACUGUGUUUAUGCUUUGCAUUCUGUGAUCUCAUGAAUACGUGAAAUCAACAUACAUCG---- ..((((...(((.(((............((.((.((....)).)).)).........(((((((((..(..(.....)..)...)))))))))))).)))...)))).....---- ( -18.30, z-score = -0.64, R) >droEre2.scaffold_4690 7393193 94 - 18748788 ------------GC--UAUUCCUCCCCCUCCGAUCGCAAGCGAUCCGAUAAAACACUGUGUUUAUGCUUUGCAUUCUGUGAUCUCAUGAAUACGUGAAAUCAACAUCG-------- ------------..--............((.(((((....))))).)).....(((.(((((((((..(..(.....)..)...))))))))))))............-------- ( -20.60, z-score = -2.89, R) >consensus ______UCUAUGUC__UAUUCCUCCCCCUCCGAUCGCGAGCGAUCCGAUAAAACACUGUGUUUAUGCUUUGCAUUCUGCGAUCUCAUGAAUACGUGAAAUCAACAUCG________ ............................((.(((((....))))).)).....(((.(((((((((..((((.....))))...)))))))))))).................... (-19.02 = -19.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:18 2011