| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,653,851 – 15,653,941 |
| Length | 90 |
| Max. P | 0.959380 |
| Location | 15,653,851 – 15,653,941 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.37 |
| Shannon entropy | 0.48839 |
| G+C content | 0.32835 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.46 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15653851 90 + 22422827 ----GGUAUGUACAGGCAUACUUGCAUACUUGCAUACAUACAGAUGUGCACCGCCUGUAUUUGUAUGUUGUGUACAUUUGUUAUUUAAAAAUAA------- ----.(((((((...(((....))).....)))))))..((((((((((((.((.((......)).)).)))))))))))).............------- ( -25.50, z-score = -1.49, R) >droPer1.super_76 219686 92 - 268861 ----UAUAUGUACAGGUAUAUUUAUAUGU----GCACUGGUAGA-AUGUUUUGCUUUUAAUUACCUUUAGUGUACCAUCAAUUUAUUAACACAAUCAACAU ----...((((.(((((((((....))))----)).)))(((((-....)))))...............((((...............)))).....)))) ( -11.56, z-score = 1.10, R) >droSim1.chrX 12136140 82 + 17042790 ----UGUAUGUACAGGCAUACUUGCAUAC--------AUACAGAUGUGCACCGCCUGUAUUUGUAUGUUGUGUACAUUUGUUAUUUAAAAAUAA------- ----((((((((.((.....)))))))))--------).((((((((((((.((.((......)).)).)))))))))))).............------- ( -23.90, z-score = -1.97, R) >droSec1.super_37 238074 82 + 454039 ----UGUAUGUACAGGCAUACUUGCAUAC--------AUACAGAUGUGCACCGCCUGUAUUUGCAUGUUGUGUACAUUUGUUAUUUAAAAAUAA------- ----((((((((.((.....)))))))))--------).((((((((((((.((.(((....))).)).)))))))))))).............------- ( -27.40, z-score = -3.02, R) >droEre2.scaffold_4690 7364277 93 - 18748788 UGUCUGUAUGUACAUGCAUACA-GAUUAUAUGCGUACAUACAGAUGUGCACCGCCUGUACUCGUAUGUUGUGCACAUUUGUUAUUUAAAAAUAA------- .((((((((((((..(((((..-.....)))))))))))))))))((((((.((..(((....))))).))))))...................------- ( -30.50, z-score = -3.05, R) >consensus ____UGUAUGUACAGGCAUACUUGCAUAC______ACAUACAGAUGUGCACCGCCUGUAUUUGUAUGUUGUGUACAUUUGUUAUUUAAAAAUAA_______ .....((((((....))))))..................((((((((((((.((.((......)).)).)))))))))))).................... (-15.06 = -15.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:06 2011