Locus 14810

Sequence ID dm3.chrX
Location 15,652,905 – 15,653,008
Length 103
Max. P 0.650679
window20382

overview

Window 2

Location 15,652,905 – 15,653,008
Length 103
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 87.38
Shannon entropy 0.17552
G+C content 0.33235
Mean single sequence MFE -24.37
Consensus MFE -18.86
Energy contribution -20.53
Covariance contribution 1.67
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.650679
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15652905 103 - 22422827
GUAAUAGGAAAGUGUUCGCAAGUGUAUUUAAACUUGUUUUUGGUAAACGCUUGUACAUAUGUAU----AUGUUUGCAAAAGAUAAGAAAUUUACUAGAGUGUGGGUC
.........(((((..(....)..)))))...(((((((((.(((((((..(((((....))))----)))))))).)))))))))..((((((......)))))). ( -22.40, z-score =  -1.77, R)
>droEre2.scaffold_4690 7363444 97 + 18748788
GUAAUAGGAAAGUGUUCGCAAGUGUAUUUAAACUUGUUUUUGGUAAACGCUUGUAUAU----------AUGCUUGCUAAAGAUAAGACACUUACUAGAGUGUGUGUC
.........(((((..(....)..)))))...((((((((((((((..((........----------..))))))))))))))))((((((....))))))..... ( -22.70, z-score =  -1.33, R)
>droYak2.chrX 9857941 107 - 21770863
GUGAUAGGAAAGUGUUCGCAAGUGUAUUUAAACUUGUUUUUGGUAAACGCUAGUACAUAUGUAUAUGCAUGUUUGCCAAAGAUAAGAAAUUUACUAAAGUGUGCGUC
((((.....(((((..(....)..)))))...((((((((((((((((((..((((....))))..))..))))))))))))))))....))))............. ( -28.00, z-score =  -2.64, R)
>consensus
GUAAUAGGAAAGUGUUCGCAAGUGUAUUUAAACUUGUUUUUGGUAAACGCUUGUACAUAUGUAU____AUGUUUGCAAAAGAUAAGAAAUUUACUAGAGUGUGCGUC
((((.....(((((..(....)..)))))...(((((((((((((((((...((((....)))).....)))))))))))))))))....))))............. (-18.86 = -20.53 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:06 2011