| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,463,823 – 11,463,921 |
| Length | 98 |
| Max. P | 0.523265 |
| Location | 11,463,823 – 11,463,921 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 75.27 |
| Shannon entropy | 0.33643 |
| G+C content | 0.28400 |
| Mean single sequence MFE | -14.73 |
| Consensus MFE | -11.24 |
| Energy contribution | -10.13 |
| Covariance contribution | -1.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11463823 98 - 23011544 GCAAGAAAUUAGUGUAUAUAAUUGUACAUUUUAGAUUAGUAGCCUAAAUCCCUGGAUUUGUAUAUACAACAAUUUGAAUAACAUGCUUACAAAAAGCG ...........(((((((....)))))))((((((((.(((...((((((....))))))....)))...))))))))......((((.....)))). ( -15.90, z-score = -0.96, R) >droSec1.super_3 6858584 87 - 7220098 GCAAGAAAUUAGUGUAUAUGAUUGUAUAUUUUAGAUCAAAGGCCAAAAUCCCUGGAUUUUUAUAUGCAACAUGCUUACCAAAAAAAG----------- ...........(((..((((.((((((((...(((((..(((........))).)))))..))))))))))))..))).........----------- ( -16.50, z-score = -1.70, R) >droSim1.chr2L 11275362 86 - 22036055 GCAAGAAAUAAGUGUAUAUGAUUGUAAAUUUUAGAUCAGUAGCCAAAAUCCAUGGAUUUUUAUAUACAACAUGCUUACAAAAAAAG------------ ((((....)..((((((((((((..........)))))......((((((....)))))))))))))....)))............------------ ( -11.80, z-score = -0.75, R) >consensus GCAAGAAAUUAGUGUAUAUGAUUGUAAAUUUUAGAUCAGUAGCCAAAAUCCCUGGAUUUUUAUAUACAACAUGCUUACAAAAAAAA____________ ...........((((((((((((..........)))))......((((((....)))))))))))))............................... (-11.24 = -10.13 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:43 2011