| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,643,743 – 15,643,803 |
| Length | 60 |
| Max. P | 0.865062 |
| Location | 15,643,743 – 15,643,803 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Shannon entropy | 0.40895 |
| G+C content | 0.26667 |
| Mean single sequence MFE | -6.26 |
| Consensus MFE | -4.16 |
| Energy contribution | -4.85 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15643743 60 - 22422827 AUUUCAAAAAAUAAGUUAGAAAUUACAGGAUUUCGAACAACCCAUAUUCAAAAACCCAUU ..............(((.((((((....)))))).)))...................... ( -5.50, z-score = -1.66, R) >droSec1.super_37 227935 56 - 454039 AUUUAAAAAAA-AAAUUCGAUAUUACAGGAUGUCG---AACACAUAUUCAAAAACCCAUU ...........-...(((((((((....)))))))---)).................... ( -8.20, z-score = -2.75, R) >droSim1.chrX_random 4055497 60 - 5698898 AUUUAAAAAAAUAAGUUCAAAAUUACAGGAUGUCGAACAACACAUAUUCAAAAACCCAUU ..............((((...(((....)))...))))...................... ( -3.20, z-score = -0.11, R) >apiMel3.GroupUn 178984617 60 + 399230636 ACGUAGAAAUAUAUAUGCAGAAUUACAAGAUUUUGUGCAACUUACAUUACGAGAACCAUU .(((((..........((((((((....))))))))..........)))))......... ( -8.15, z-score = -1.91, R) >consensus AUUUAAAAAAAUAAAUUCAAAAUUACAGGAUGUCGAACAACACAUAUUCAAAAACCCAUU ..............((((((((((....))))))))))...................... ( -4.16 = -4.85 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:05 2011