| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,606,806 – 15,606,886 |
| Length | 80 |
| Max. P | 0.830435 |
| Location | 15,606,806 – 15,606,886 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 69.17 |
| Shannon entropy | 0.49927 |
| G+C content | 0.42908 |
| Mean single sequence MFE | -20.25 |
| Consensus MFE | -6.99 |
| Energy contribution | -10.18 |
| Covariance contribution | 3.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15606806 80 + 22422827 UAAUUGUGAGUAUGGCUAGUGGUAUUUCCGAGAACGCAUAAACACGCACACAUACAUUGGUGCGAGAAAAGACUCGCGGA ...((((((((...((...(((.....))).....)).......(((((.((.....))))))).......)))))))). ( -20.70, z-score = -1.41, R) >droSim1.chrX 12103938 80 + 17042790 UAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGCGAGAAAAGACUCGCGGA ...((((((((..((((..(((.....)))..))))........(((((.(((...)))))))).......)))))))). ( -23.50, z-score = -2.72, R) >droSec1.super_37 190318 80 + 454039 UAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGCGAGAAAAGACUCGCGGA ...((((((((..((((..(((.....)))..))))........(((((.(((...)))))))).......)))))))). ( -23.50, z-score = -2.72, R) >droAna3.scaffold_12929 623233 69 - 3277472 UACUAGUGAGUACCGUU---UAAUCAUCCAAUUUUUUUGCGAUGAGCCUACCUAGGCUAA----AAAAAAACCCCG---- ((((....))))..(((---(..((((((((.....))).)))))((((....))))...----....))))....---- ( -13.30, z-score = -2.80, R) >consensus UAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGCGAGAAAAGACUCGCGGA ...((((((((...(((..(((.....)))..))).........(((((..........))))).......)))))))). ( -6.99 = -10.18 + 3.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:04 2011