| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,591,870 – 15,591,971 |
| Length | 101 |
| Max. P | 0.917624 |
| Location | 15,591,870 – 15,591,971 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.02 |
| Shannon entropy | 0.41337 |
| G+C content | 0.55837 |
| Mean single sequence MFE | -40.22 |
| Consensus MFE | -27.55 |
| Energy contribution | -28.42 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15591870 101 - 22422827 -------------GGCAAUCACGAU-AGCAGUCACUGCUUCCUGCUCAUCUCUA--GCGCAACCUUGAGCGACAACCCAAGGUGCGUGUGGGUGGUGGGUGGCGGUGUUGGGGUGUG -------------......((((..-..(((.(((((((.((..(.(((((...--(((((.(((((.(......).))))))))))..))))))..)).))))))))))...)))) ( -41.40, z-score = -1.30, R) >droSim1.chrX 12087034 96 - 17042790 -------------GGCAAUCACGAU-AGCAGUCACUGCUUCCUGCUCAUCUCUA--GCGCAACCUUGAGCGACAACCCAAGGUGCGUGUGGGUGGUGGGUGUCGGUGUUGUG----- -------------.(((((..((((-(((((...))))..((..(.(((((...--(((((.(((((.(......).))))))))))..))))))..)))))))..))))).----- ( -38.10, z-score = -1.69, R) >droSec1.super_37 174110 96 - 454039 -------------GUCAAUCACGAU-AGCAGUCACUGCUUCCUGCUCAUCUCUA--GCGCAACCUUGAGCGACAACCCAAGGUGCGUGUGGGUGGUGGGUGGCGGUGUUGUG----- -------------(((......)))-.((((.(((((((.((..(.(((((...--(((((.(((((.(......).))))))))))..))))))..)).))))))))))).----- ( -41.00, z-score = -2.56, R) >droYak2.chrX 9796637 109 - 21770863 GACUUGUCGCGAUAGCAAUCACGUU-AGCAGUCACUGCUUUCUGCUCAUCUCUA--GCGCAACCUUGAGCGGCAACCCAAGGUGCGUGUGGGUGGUGGGUGGUGGUGUUGUG----- (((.((..((....))...)).)))-.((((.(((..((.((..(.(((((...--(((((.(((((.(.(....))))))))))))..))))))..)).))..))))))).----- ( -42.00, z-score = -1.34, R) >droEre2.scaffold_4690 7302116 109 + 18748788 GAUUUGUCGCGAUCGCAAUCACGAG-AGCAGUCACUGCUUCCUGCUCAUCUCUA--GCUCAACCUUGAGCGGCAACCUUAGGUGCGUGUGGGUGGUGGGUGGUGGUGUUGUG----- ....(.(((.(((....))).))).-)((((.(((..((.((..(.(((((...--((.((.(((.(((.(....))))))))).))..))))))..)).))..))))))).----- ( -37.80, z-score = -0.34, R) >droAna3.scaffold_12929 606476 112 + 3277472 UGUUUUUUCUGUCACCGUUUCUGAUAAACCGUGACUGAAUAUGGGCCAUCUCUAGCGCGCAACCUUGAAUGACAAUCCAAGGUGCGUGUGGGCGGGUGGCAGUGUUGUUGUU----- ..........(((((.((((.....)))).)))))..(((((..(((((((((.(((((((.(((((.((....)).)))))))))))).)).))))))).)))))......----- ( -41.00, z-score = -2.68, R) >consensus _____________GGCAAUCACGAU_AGCAGUCACUGCUUCCUGCUCAUCUCUA__GCGCAACCUUGAGCGACAACCCAAGGUGCGUGUGGGUGGUGGGUGGCGGUGUUGUG_____ ...........................((((.(((((((.(((((.(((((.....(((((.(((((.(......).))))))))))..)))))))))).)))))))))))...... (-27.55 = -28.42 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:02 2011