| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,588,278 – 15,588,388 |
| Length | 110 |
| Max. P | 0.863995 |
| Location | 15,588,278 – 15,588,388 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 88.66 |
| Shannon entropy | 0.19201 |
| G+C content | 0.48350 |
| Mean single sequence MFE | -32.49 |
| Consensus MFE | -23.58 |
| Energy contribution | -24.34 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15588278 110 + 22422827 GGAGGAGCAGCUGCUCUG--CCAAUUGGCACACAAUGGAGCGGCACAUGCCACAC--UCUGGCGAAAAGAGAGAAAAACAAAAUCAAAUGCCCGAUGAAUAGAAAAUCGGGGGA .(((..((((((((((((--((....))).......))))))))...)))..).(--(((.......))))............))...(.((((((.........)))))).). ( -32.01, z-score = -1.71, R) >droEre2.scaffold_4690 7295195 104 - 18748788 AGAGGAGCAGCUGCUCUG--CCAAUUGGCACACAAUGGAGCGGCACAUGCCACAC--UCUGGCGAAAAGAGAA------AAAAUCAAAUAUCUGAUGAAUAGAAAAUCGGGGGA .(((..((((((((((((--((....))).......))))))))...)))..).(--(((.......))))..------....)).....((((((.........))))))... ( -27.21, z-score = -1.16, R) >droYak2.chrX 9789878 101 + 21770863 AGAGGAGCAGCUGCUCUGUGCCAAUUGGCACACAAUGGAGCGGCACAUGCCACACAGUCUGGCGAAAAGAGAAA-----AAAAUCAAAAAUCCGAUGAAUAGAAAA-------- ...(((...(((((((((((((....))))).....))))))))...(((((.......)))))..........-----...........))).............-------- ( -30.20, z-score = -2.72, R) >droSec1.super_37 168197 110 + 454039 GGAGGAGCAGCUGCUCUG--CCAAUUGGCACACAAUGGAGCGGCACAUGCCACAC--UCUGGCGAAAAGAGAGAAAAACAAAAUCAAAUGCCCGAUGAAUAGGAAAUCGGGCAA .(((..((((((((((((--((....))).......))))))))...)))..).(--(((.......))))............))...((((((((.........)))))))). ( -36.51, z-score = -2.94, R) >droSim1.chrX 12081111 110 + 17042790 GGAGGAGCAGCUGCUCUG--CCAAUUGGCACACAAUGGAGCGGCACAUGCCACAC--UCUGGCGAAAAGAGAGAAAAACAAAAUCAAAUGCCCGAUGAAUAGAAAAUCGGGCAA .(((..((((((((((((--((....))).......))))))))...)))..).(--(((.......))))............))...((((((((.........)))))))). ( -36.51, z-score = -3.25, R) >consensus GGAGGAGCAGCUGCUCUG__CCAAUUGGCACACAAUGGAGCGGCACAUGCCACAC__UCUGGCGAAAAGAGAGAAAAACAAAAUCAAAUGCCCGAUGAAUAGAAAAUCGGGCAA .((......((((((((......((((.....))))))))))))...(((((.......)))))...................)).....((((((.........))))))... (-23.58 = -24.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:47:01 2011