| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,568,894 – 15,569,004 |
| Length | 110 |
| Max. P | 0.943234 |
| Location | 15,568,894 – 15,569,004 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Shannon entropy | 0.29756 |
| G+C content | 0.45384 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -19.06 |
| Energy contribution | -19.56 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15568894 110 + 22422827 CUUGGCCAACU---GAUCAUGAUCCUUCUCGGUGGCCAAAUAAAAAAUCUCACGAUCGUGGAAAAUUCGCACAGCUGUUGCCA-GAUCGUAAAU-CGAUCGGUAAACGGUUAUAA----- .(((((((.((---((....((....)))))))))))))........((.(((....)))))..........((((((((((.-(((((.....-)))))))).)))))))....----- ( -32.80, z-score = -3.04, R) >droSim1.chrX 12063607 112 + 17042790 CUUGGCCAACUACUGAUCAUGAUCAUUCUCGGUGGCCAU-UAAAAAAUCUCACGAUCGUGGAAGAUUCGCACAGCUGUUGCCA-GAUCGUAAAU-CGAUCGGUAAACGAUUAUAA----- ..((((((.....((((....)))).......)))))).-.............(((((((((....)).))).....(((((.-(((((.....-))))))))))..))))....----- ( -28.30, z-score = -1.23, R) >droSec1.super_37 147152 109 + 454039 CUUGGCCAACU---GAUCAUGAUCAUUCUCGGUGGCCAU-UAAAAAAUCUCACGAUCAUGGAAGAUUCGCACAGCUGUUGCCA-GAUCGUAAAU-CGAUCGGUAAACGGUUAUAA----- ..((((((.((---((..((....))..)))))))))).-.....(((((..(......)..))))).....((((((((((.-(((((.....-)))))))).)))))))....----- ( -31.40, z-score = -2.27, R) >droYak2.chrX 9763983 103 + 21770863 CUUGGCCAACU---------GAUCAUCCUCGGUGGCCAU-UAAAAAAUCUCACGAUCGUGCAAGAUUCGCACAGCUGUUGCCA-GAUCGUAAAU-CGAUCGGUAAACGGCACUAA----- ..((((((.((---------((......)))))))))).-.................((((.......)))).(((((((((.-(((((.....-)))))))).)))))).....----- ( -36.70, z-score = -4.41, R) >droEre2.scaffold_4690 7275994 102 - 18748788 CUUGGCCAACU---------GAUCAUCCUCGGUGGCCAU-UAAAAAAUCUCACGAUCACGGAAGAUUCGCACAGCUGUUGCC--GAUCGUAAAU-CGAUCGGUAAACGGUUAUAA----- ..((((((.((---------((......)))))))))).-.....(((((..((....))..))))).....((((((((((--(((((.....-)))))))).)))))))....----- ( -38.10, z-score = -4.95, R) >droAna3.scaffold_12929 575936 104 - 3277472 CUUGGCCAACU---------GGGGAAUG-----GGCCAU--CGAAAAUCUCACGACCAUCCUAGAUUCGCACAGCUGUUGGCAGGAUCGUAAAUUCGAUCAGUUAAUGGCCAUAAUGCCU ...(((...((---------(((..(((-----(....(--((.........)))))))))))).........(((((((((..(((((......))))).)))))))))......))). ( -28.10, z-score = -0.25, R) >consensus CUUGGCCAACU_________GAUCAUUCUCGGUGGCCAU_UAAAAAAUCUCACGAUCAUGGAAGAUUCGCACAGCUGUUGCCA_GAUCGUAAAU_CGAUCGGUAAACGGUUAUAA_____ ..((((((........................)))))).......(((((..((....))..)))))......(((((((((..(((((......)))))))).)))))).......... (-19.06 = -19.56 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:56 2011