| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,453,314 – 11,453,368 |
| Length | 54 |
| Max. P | 0.936931 |
| Location | 11,453,314 – 11,453,368 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.04815 |
| G+C content | 0.41667 |
| Mean single sequence MFE | -11.33 |
| Consensus MFE | -11.24 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11453314 54 - 23011544 CCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUAGCAACGCGUUUAUGGAU ....((((....((((......))))((((((..........)))))))))).. ( -11.10, z-score = -1.93, R) >droAna3.scaffold_12916 12158578 54 + 16180835 CCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUGGCAACGCGUUUAUGGAU ....((((....((((......))))((((((....(....))))))))))).. ( -11.80, z-score = -1.65, R) >droEre2.scaffold_4929 12655806 54 + 26641161 GCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUAGCAGCGCGUUUAUGGAU ....(((((((.((((......))))...(((........)))..))))))).. ( -11.60, z-score = -1.18, R) >droYak2.chr2L 7854128 54 - 22324452 CCGGCCAUAAAAUCAUGAAGAAAUGAAAGCGCAACUAGCAACGCGUUUAUGGAU ....(((((((.((((......))))..(((..........))).))))))).. ( -11.30, z-score = -1.42, R) >droSec1.super_3 6848347 54 - 7220098 CCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUAGCAACGCGUUUAUGGAU ....((((....((((......))))((((((..........)))))))))).. ( -11.10, z-score = -1.93, R) >droSim1.chr2L 11265157 54 - 22036055 CCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUAGCAACGCGUUUAUGGAU ....((((....((((......))))((((((..........)))))))))).. ( -11.10, z-score = -1.93, R) >consensus CCGGCCAUAAAAUCAUGAAGAAAUGAAAACGCAACUAGCAACGCGUUUAUGGAU ....((((....((((......))))((((((..........)))))))))).. (-11.24 = -11.10 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:42 2011