| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,534,775 – 15,534,876 |
| Length | 101 |
| Max. P | 0.928019 |
| Location | 15,534,775 – 15,534,876 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 96.63 |
| Shannon entropy | 0.05965 |
| G+C content | 0.29109 |
| Mean single sequence MFE | -17.00 |
| Consensus MFE | -16.78 |
| Energy contribution | -16.58 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.928019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15534775 101 + 22422827 AACAAACAAUAACAAUCAACAGCCCACAAAGCGUUUAACAAAACAAAACUGGGUAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAAUUCAUUAAUCAGUUG .........((((((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))))..)))).))))))))) ( -16.60, z-score = -1.51, R) >droSim1.chrX 12015041 101 + 17042790 AACAAACAAUAACAAUCAACAGCCCACAAAGCGUUUAACAAAACAAAACUGGGCAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAAUUCAUUAAUCAGUUG .........((((((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))))..)))).))))))))) ( -18.20, z-score = -2.22, R) >droSec1.super_37 113239 101 + 454039 AACAAAUAAUAACAAUCAACAGCCCACAAAGCGUUUAACAAAACAAAACUGGGCAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAAUUCAUUAAUCAGUUG .........((((((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))))..)))).))))))))) ( -18.20, z-score = -2.19, R) >droYak2.chrX 9724120 101 + 21770863 AACCAACAAUAACAAUCAACAGCCCACAAAGCGUUUAGCAAAACAAAACUGGGUAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAACUCAUUAAUCAGCUG .............((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))).)).))).))))).... ( -15.60, z-score = -0.85, R) >droEre2.scaffold_4690 7242155 101 - 18748788 AACAAACAAUAACAAUCAGCAGCCCACAAAGCGUUUAACAAAACAAAACUGGGUAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAAUUCAUCAAUCAGUUG .........((((((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))))..)))).))))))))) ( -16.40, z-score = -1.21, R) >consensus AACAAACAAUAACAAUCAACAGCCCACAAAGCGUUUAACAAAACAAAACUGGGUAUUGAUUUGAUUUAUGGUAAUGAUUUAAUUAAUUCAUUAAUCAGUUG .........((((((((((..(((((......((((....)))).....))))).))))))(((((.((((((((......))))..)))).))))))))) (-16.78 = -16.58 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:53 2011