Locus 14797

Sequence ID dm3.chrX
Location 15,511,220 – 15,511,313
Length 93
Max. P 0.998572
window20364 window20365

overview

Window 4

Location 15,511,220 – 15,511,313
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 73.10
Shannon entropy 0.44437
G+C content 0.41095
Mean single sequence MFE -24.47
Consensus MFE -12.74
Energy contribution -14.42
Covariance contribution 1.68
Combinations/Pair 1.15
Mean z-score -2.48
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.98
SVM RNA-class probability 0.977731
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15511220 93 + 22422827
--------AGCCAGAGAACCAAACAAAUAGA-GCCCAAAUGACAAUUGGGCCUAAAGAAAGGUGUGAUUACGACUAUUUGUUGAGCAAACAGCGUAAUUGGG
--------..((.....(((.......(((.-((((((.......)))))))))......)))..(((((((.((.((((.....)))).))))))))))). ( -24.32, z-score =  -2.84, R)
>droEre2.scaffold_4690 7219358 93 - 18748788
--------AAAUAAAUAAAGGGAGAAUUAAGUGCCCGCAUGCCAAUUAGGCGCAG-GAAAGGUGUGAUUACGAAUAUUUGUAGAUCAAAAGGCAUAAUUGGG
--------.........................((((.(((((......((((..-.....))))((((((((....)))).))))....)))))...)))) ( -17.10, z-score =  -0.33, R)
>droYak2.chrX 9700662 101 + 21770863
UCCCAGAAAACUAAACAAAUAAAGGGAGAAAUGCGCGAAUGACAAUUAGGCCUAA-GAAAGGUGUGAUUACGACGAUUUGUGGAUCUAAUGGCAUAAUUGGG
((((...................))))...((.(((((((...(((((.((((..-...)))).)))))......))))))).))(((((......))))). ( -18.91, z-score =  -0.77, R)
>droSec1.super_37 89464 88 + 454039
------------AGAGGGCCAAACAAAUAGG-GCCCAAAUGACAAUUGGGCCUAA-GAAAAUUGUGAUUACGACUGUUUGUGGAUCAAACAGCGUAAUUGGU
------------.....(((.........((-((((((.......))))))))..-.........(((((((.(((((((.....))))))))))))))))) ( -31.50, z-score =  -4.42, R)
>droSim1.chrX 11993711 88 + 17042790
------------AGAGGGCCAAACAAAUAGG-GCCCAAAUGACAAUUGGGCCUAA-GAAAAUUGUGAUUACGACUGUUUGCGGAUCAAACAGCGUAAUUGGU
------------.....(((.........((-((((((.......))))))))..-.........(((((((.(((((((.....))))))))))))))))) ( -30.50, z-score =  -4.03, R)
>consensus
________A___AGAGAACCAAACAAAUAGG_GCCCAAAUGACAAUUGGGCCUAA_GAAAGGUGUGAUUACGACUAUUUGUGGAUCAAACAGCGUAAUUGGG
................................((((((.......))))))..............(((((((.(((((((.....))))))))))))))... (-12.74 = -14.42 +   1.68)

alignment

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secondary structure

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dotplot

Postscript

Window 5

Location 15,511,220 – 15,511,313
Length 93
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 73.10
Shannon entropy 0.44437
G+C content 0.41095
Mean single sequence MFE -22.10
Consensus MFE -13.44
Energy contribution -14.48
Covariance contribution 1.04
Combinations/Pair 1.21
Mean z-score -3.10
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.41
SVM RNA-class probability 0.998572
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15511220 93 - 22422827
CCCAAUUACGCUGUUUGCUCAACAAAUAGUCGUAAUCACACCUUUCUUUAGGCCCAAUUGUCAUUUGGGC-UCUAUUUGUUUGGUUCUCUGGCU--------
.((((((((((((((((.....))))))).))))))...(((...(..(((((((((.......))))))-.)))...)...)))....)))..-------- ( -27.50, z-score =  -4.50, R)
>droEre2.scaffold_4690 7219358 93 + 18748788
CCCAAUUAUGCCUUUUGAUCUACAAAUAUUCGUAAUCACACCUUUC-CUGCGCCUAAUUGGCAUGCGGGCACUUAAUUCUCCCUUUAUUUAUUU--------
........(((((..((((.(((........)))))))........-..(((((.....)))..))))))).......................-------- ( -14.20, z-score =  -1.29, R)
>droYak2.chrX 9700662 101 - 21770863
CCCAAUUAUGCCAUUAGAUCCACAAAUCGUCGUAAUCACACCUUUC-UUAGGCCUAAUUGUCAUUCGCGCAUUUCUCCCUUUAUUUGUUUAGUUUUCUGGGA
..((((((.(((....(((......)))...((....)).......-...))).))))))...............((((...................)))) ( -12.61, z-score =   0.11, R)
>droSec1.super_37 89464 88 - 454039
ACCAAUUACGCUGUUUGAUCCACAAACAGUCGUAAUCACAAUUUUC-UUAGGCCCAAUUGUCAUUUGGGC-CCUAUUUGUUUGGCCCUCU------------
.((((((((((((((((.....))))))).)))))...........-...(((((((.......))))))-)........))))......------------ ( -28.00, z-score =  -5.02, R)
>droSim1.chrX 11993711 88 - 17042790
ACCAAUUACGCUGUUUGAUCCGCAAACAGUCGUAAUCACAAUUUUC-UUAGGCCCAAUUGUCAUUUGGGC-CCUAUUUGUUUGGCCCUCU------------
.((((((((((((((((.....))))))).)))))...........-...(((((((.......))))))-)........))))......------------ ( -28.20, z-score =  -4.79, R)
>consensus
CCCAAUUACGCUGUUUGAUCCACAAAUAGUCGUAAUCACACCUUUC_UUAGGCCCAAUUGUCAUUUGGGC_CCUAUUUGUUUGGUUCUCU___U________
....(((((((((((((.....))))))).))))))...............((((((.......))))))................................ (-13.44 = -14.48 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:51 2011