| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,487,270 – 15,487,383 |
| Length | 113 |
| Max. P | 0.678256 |
| Location | 15,487,270 – 15,487,383 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.98 |
| Shannon entropy | 0.09666 |
| G+C content | 0.47350 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -22.57 |
| Energy contribution | -23.24 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15487270 113 + 22422827 CUCACACACAGAUACUCGGGCACGCACACAGCGACAAUUCGGCAAGCAGACAACAACACAACACGCUGUUUUAA-UUAUUAUUAGCCCUCGCUGUUGUUGUCCCUGCCUAUUUG ........((((((..((((.(((.(((((((((......(((((((((.(.............)))))))(((-(....))))))).)))))).)))))).))))..)))))) ( -27.22, z-score = -2.20, R) >droEre2.scaffold_4690 7196607 111 - 18748788 CGCACUCACAGAUACGCGG-CACACACACAGCGACAAUUCGGCGAGCAGACAACAACACAACACGCUGUUU--AAUUAUUAUUAGCCCUCGCUGUUGUUGUCACUGCCUAUUUG ........((((((.((((-...........(((....))).......((((((((((......((((...--.........))))......)))))))))).)))).)))))) ( -26.40, z-score = -1.43, R) >droSim1.chrX 11964382 114 + 17042790 CUCACACACAGAUACUCGGGCACGCACACAGCGACAAUUCGGCGAGCAGACAACAACACAACACGCUGUUUUAAAUUAUUAUUAGCCCUCGUUGUUUUUGUCACUGCCUAUUUG ........(((((....(((((.((.....))(((((..(((((((..(....)..........((((..............)))).)))))))...)))))..)))))))))) ( -23.34, z-score = -1.32, R) >consensus CUCACACACAGAUACUCGGGCACGCACACAGCGACAAUUCGGCGAGCAGACAACAACACAACACGCUGUUUUAAAUUAUUAUUAGCCCUCGCUGUUGUUGUCACUGCCUAUUUG ........((((((........(((.....))).......(((.((..((((((((((......((((..............))))......)))))))))).))))))))))) (-22.57 = -23.24 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:48 2011