| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,459,455 – 15,459,546 |
| Length | 91 |
| Max. P | 0.923703 |
| Location | 15,459,455 – 15,459,546 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 85.35 |
| Shannon entropy | 0.25650 |
| G+C content | 0.41089 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -20.38 |
| Energy contribution | -21.02 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15459455 91 - 22422827 --------ACUUUAACUCUUGAUUGUGCGGCAAA-UUUCGCUCGGUUUUGAUUCCUAAUGGAUUCAGGAUGGAUGGAUUGUAAUCCAUGUUGUCCUAUCG --------............(((.(..(((((..-......((.(((((((.(((....))).))))))).))(((((....))))))))))..).))). ( -25.30, z-score = -2.26, R) >droEre2.scaffold_4690 7170500 94 + 18748788 ACUU-CCCAAUUAAACUCUUGAUUGUGCGGCAAA-UUUCGGUUGGUUUUGAUUUCUAAUGGACUCAGGA----UGGAUUGUAAUCCACGUUGCCGUAUUG ....-..(((((((....)))))))(((((((((-((.(((((.(((((((.(((....))).))))))----).))))).))).....))))))))... ( -25.70, z-score = -2.19, R) >droYak2.chrX 9652659 94 - 21770863 ACUU-CCCAAUUAAACUCUUGAUUGUCUGGUAAA-UUUCGGUUGGUUUUGAUUCCUAAUGGAUUCAGGA----UGGAUUGUAAUCCACGUUGCCGUAUCG ....-..(((((((....)))))))...((((((-((.(((((.(((((((.(((....))).))))))----).))))).))).....)))))...... ( -22.60, z-score = -1.32, R) >droSec1.super_37 38680 100 - 454039 ACUUCCCCAAUUAAACUCUUGAUUGUGUGGCAAAAUUUCGCUCGGUCUUGAUUCCUAAUGGAUUCAGAACGAAUGGAUUGUAAUCCACGUUGCCGUAUCG .......(((((((....)))))))...(((((........(((.(((.((.(((....))).))))).))).(((((....)))))..)))))...... ( -24.50, z-score = -1.88, R) >droSim1.chrX_random 232535 100 - 5698898 ACUUCCCCAAUUAAACCCUUGAUUGUGUGGCGAAUUUUCGCUCGGUUUUGAUUCCUAAUGGAUUCAGAACGAAUGGAUUGUAAUCCACGUUGCCGUAUCG .......(((((((....)))))))...(((((...........(((((((.(((....))).)))))))...(((((....)))))..)))))...... ( -26.10, z-score = -2.01, R) >consensus ACUU_CCCAAUUAAACUCUUGAUUGUGUGGCAAA_UUUCGCUCGGUUUUGAUUCCUAAUGGAUUCAGGA_G_AUGGAUUGUAAUCCACGUUGCCGUAUCG .......(((((((....)))))))((((((((...........(((((((.(((....))).)))))))...(((((....)))))..))))))))... (-20.38 = -21.02 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:47 2011