| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,445,749 – 15,445,841 |
| Length | 92 |
| Max. P | 0.826020 |
| Location | 15,445,749 – 15,445,841 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 63.89 |
| Shannon entropy | 0.68606 |
| G+C content | 0.53971 |
| Mean single sequence MFE | -29.15 |
| Consensus MFE | -16.53 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15445749 92 - 22422827 ACGCGCUGGGAUUUCCCGGGGUAGUGUGUUAUGACCGAGAAUCGCUUGUU-UGUUUGCGGUGAUAACGCGCCACG-------AGCUUCGCUCUGGAGAAC---- ..((.(((((....))))).)).(((((((((.((((..(((........-.)))..)))).)))))))))((.(-------(((...))))))......---- ( -34.30, z-score = -1.76, R) >droSec1.super_37 20899 92 - 454039 ACGCGCUGGGAUUUCCCGGGGUAGUGUGUUAUGACCGAGAAUCGCUUGUU-UGUCUGCGGUGAUAACGCGCCACG-------AGCUUCGUUCUGGAGAAC---- ..((.(((((....))))).((.(((((((((.(((((((..........-..))).)))).))))))))).)).-------.))...((((....))))---- ( -33.30, z-score = -1.41, R) >droYak2.chrX 9629912 75 - 21770863 ACGCG-UGGGAUUUCCUGGGGCAGUGUGUUAUGACCGAAAGUCGCUUGUU-UGUCUGCGGUGAAAACGCUAGAGAAC--------------------------- ..((.-(.((.....)).).))...(((((.(.((((..((.((......-)).)).)))).).)))))........--------------------------- ( -16.10, z-score = 1.36, R) >droEre2.scaffold_4690 7158864 99 + 18748788 ACGCGCUGGGAUUUCCUGGGGCAGUGUGUUAUAGCCGAAAGUCGCUUGUU-UGUCUGCGGUGAUAACGCGCCACCCCAGAAUGGGGCUCUUCUAGAGAAC---- ..((.(..((....))..).)).(((((((((.((((..((.((......-)).)).)))).)))))))))..((((.....))))(((.....)))...---- ( -37.30, z-score = -1.62, R) >droAna3.scaffold_12929 437431 97 + 3277472 ---AGCUGGAAUUUUCCGGGGUAGUGGGUUAUGGCC--AAAUAGCUUGUU-UGUCUGCGGUGAUAACGGGCCACGA-GUUUCUUCUUUAUGCCACAUGCCGCAU ---..(((((....)))))((((((((....(((((--.....(((.((.-.....))))).......))))).((-(......)))....)))).)))).... ( -26.40, z-score = 0.60, R) >droPer1.super_26 1144098 93 - 1349181 -------AGAAGAU--UGGGGCACUGCGUUAUGGCC--AAAUUGCUUCUUCUGUUUGCGGUGAUAACGGGCCAAGACUGACUACCGUCCCGUCCCGUCCCGACC -------......(--((((((.....(((((.(((--.....((.......))....))).)))))(((.(..(((........)))..).)))))))))).. ( -27.50, z-score = -0.25, R) >consensus ACGCGCUGGGAUUUCCCGGGGCAGUGUGUUAUGACCGAAAAUCGCUUGUU_UGUCUGCGGUGAUAACGCGCCACGA______AGCUUCCUUCUAGAGAAC____ ..((.(((((....))))).)).(((((((((.((((......((.......))...)))).)))))))))................................. (-16.53 = -18.45 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:46 2011