| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,452,799 – 11,452,904 |
| Length | 105 |
| Max. P | 0.558216 |
| Location | 11,452,799 – 11,452,904 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Shannon entropy | 0.40198 |
| G+C content | 0.47896 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.49 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11452799 105 - 23011544 CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACAGGGCACAAUGAGCGCGAUCAGCGAUCGACAAUGGGCGACGGGGCGAGGUCGUAAACAGA----- ........(((...(((((((.((((....)))).))))).((...(.((.((.((....(((((...))))).)).)).))..)...)))).))).........----- ( -24.20, z-score = -0.74, R) >droSim1.chr2L 11264642 105 - 22036055 CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACAGGGCACAAUGAGCGCGAUCAGCGAUCGACAAUGGGCGACGGGGCGAGGUCGUAAACAGA----- ........(((...(((((((.((((....)))).))))).((...(.((.((.((....(((((...))))).)).)).))..)...)))).))).........----- ( -24.20, z-score = -0.74, R) >droSec1.super_3 6847819 105 - 7220098 CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACAGGGCACAAUGAGCGCGAUCAGCGAUCGACAAUGGGCGACGGGGCGAGGUCGUAAACAGA----- ........(((...(((((((.((((....)))).))))).((...(.((.((.((....(((((...))))).)).)).))..)...)))).))).........----- ( -24.20, z-score = -0.74, R) >droYak2.chr2L 7853508 105 - 22324452 CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACACGGCACAAUGAGCGCGAUCAGCGAUCGACAAAGGGCGACGGGGCGAGGUCGUAAACAGG----- ........(((...(((((((.((((....)))).))))).((.(.((.(....(((.(((.....))).)))......).))...).)))).))).........----- ( -23.40, z-score = -0.68, R) >droEre2.scaffold_4929 12655103 105 + 26641161 CAAUAAAAUAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACAGGGCACAAUGAGUGCGAUCAGCGAUCGACAAUGGGCGACGGGGCGAGGUCGUAAACAGA----- .............((((((((.((((....)))).)))))........((((.....)))))))..((((((.....(.(....).).....)))))).......----- ( -25.10, z-score = -1.26, R) >droAna3.scaffold_12916 12158020 105 + 16180835 CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCCCGGGGCACAAUGAACGCGAUCAGCGAUCGACAAUGGGCGUCGGGGCGAGGUCGUAAACAUA----- ........(((...(((((((.((((....)))).))))).((((.((((.((.((....(((((...))))).)).)).)).)).)))))).))).........----- ( -32.60, z-score = -2.52, R) >dp4.chr4_group3 6907768 105 - 11692001 UAAUAAAAGAUAAAUUGUCUGGUCUAUAUGUAGAGCAGACACCACA----AUGA-GUGCGCGAUCAGCGAUCCACAAUGGGCGACGGGGCGAGGUCGUAAACCCGGUAAA ...............((((((.((((....)))).))))))(((..----.((.-.(.(((.....))))..))...)))....(((((((....)))...))))..... ( -28.90, z-score = -1.18, R) >droPer1.super_1 8355811 105 - 10282868 UAAUAAAAGAUAAAUCGUCUGGUCUAUAUGUAGAGCAGACACCACA----AUGA-GUGCGCGAUCAGCGAUCCACAAUGGGCGACGGGGCGAGGUCGUAAACCCAGUAAA ................(((((.((((....)))).)))))......----....-((((((.....)))...)))..((((((((........))))....))))..... ( -26.70, z-score = -0.78, R) >droMoj3.scaffold_6500 5117054 79 + 32352404 UAAUAGAAGAUAAAUCGUCUGGUUUGCAUUUAGAGCAGACAUCACA---------AUGCGCGAUCAGCGACCC-----GGGC---------UGGUCGUAAAC-------- ................(((((.((((....)))).)))))......---------....(((((((((.....-----..))---------)))))))....-------- ( -23.30, z-score = -2.27, R) >droGri2.scaffold_15126 7285304 86 + 8399593 UAAUAGAACAUAAAUUGUCUGGUUUACAUUUAGAGCAGACAUCACA---------AUGCGCGAUCAGCGACCCUU-UUGGCCU------UUUGGCCAUAAAC-------- ........(((....((((((.((((....)))).)))))).....---------)))(((.....)))......-.(((((.------...))))).....-------- ( -22.70, z-score = -2.99, R) >consensus CAAUAAAAGAUAAAUCGUCUGGUUUAUAUGUAGAGCAGACAGCACAGGGCACAAUGAGCGCGAUCAGCGAUCGACAAUGGGCGACGGGGCGAGGUCGUAAACAGA_____ ................(((((.((((....)))).)))))..........................((((((.......(....).......))))))............ (-15.50 = -15.49 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:41 2011