| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,427,202 – 15,427,306 |
| Length | 104 |
| Max. P | 0.574764 |
| Location | 15,427,202 – 15,427,306 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 61.64 |
| Shannon entropy | 0.67804 |
| G+C content | 0.41428 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -10.48 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15427202 104 + 22422827 UCUUGAUACUGUUUAAAAAACGCCAACAUAUGCUGGUAAAGGAUUACUGCCAGGAGCAGAAGGAAACUCACUUUUAGCAGGCUAAAAUG-UGGGCGGUGGGUGGC---- ........(..((((.....((((.((((..((((.((((((....((((.....)))).((....))..)))))).)).))....)))-).)))).))))..).---- ( -27.90, z-score = -0.97, R) >droAna3.scaffold_12929 411576 96 - 3277472 ------UUUCAUGUCUUUUUUAUUAAAAAAUCCUU-UAAGAAAUUGAUCAAAGGAUUUCGUCAA--CUGAUUGUGUGUGAAAUGAAAUGAUUUUCAGUGAGUCCU---- ------((((((.((............((((((((-(((....))))....))))))).(((..--..))).......)).)))))).(((((.....)))))..---- ( -13.10, z-score = 0.86, R) >droYak2.chrX 9611692 85 + 21770863 ----------------------UUUUGGUAUCAAAGUAAAGGAUUACUGCCAGGAGCAGAAGAAA-CUCACUUUUAGGAGACUAAAAUG-UGGGCGGUGCACGACGGUU ----------------------..((((((((..............((((.....))))......-(((((((((((....)))))).)-)))).))))).)))..... ( -23.80, z-score = -2.46, R) >droSec1.super_73 161121 103 + 167737 UCUUUAUACUGUUUAAAGAACGCCAACAUAUUUUGGUAAAGGAUUACUGCCAGGAGCAGAAGGAA-CGCACUUUUAGCAGGCUAAAAUG-UGGGCGGUGGGUGGC---- ((((((.......)))))).((((..(((((((((((...((.......))....(((((((...-....))))).))..)))))))))-)))))).........---- ( -26.70, z-score = -0.86, R) >droSim1.chrX 11892384 103 + 17042790 UCUUGAUACUGUUUAAAGAACGCCAACAUAUGUUGGUAAAGGAUUACUGCCAGGAGCAGAAGGAA-CUCACUUUUAGCAGGCUAAAAUG-UGGGCGGUGGGUGGC---- ((((....((((((.......((((((....))))))...((.......))..)))))).))))(-((((((....((..((......)-)..)))))))))...---- ( -26.10, z-score = -0.38, R) >consensus UCUU_AUACUGUUUAAAGAACGCCAACAUAUCCUGGUAAAGGAUUACUGCCAGGAGCAGAAGGAA_CUCACUUUUAGCAGGCUAAAAUG_UGGGCGGUGGGUGGC____ .....................((((((....))))))......((((((((..........((....))..((((((....)))))).....))))))))......... (-10.48 = -10.80 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:39 2011