| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,425,491 – 15,425,610 |
| Length | 119 |
| Max. P | 0.629502 |
| Location | 15,425,491 – 15,425,596 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.79 |
| Shannon entropy | 0.26154 |
| G+C content | 0.29773 |
| Mean single sequence MFE | -15.92 |
| Consensus MFE | -9.88 |
| Energy contribution | -11.19 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15425491 105 + 22422827 GUUUAUCAAUCGCCUCCC--AUUCAUAACAAUAAAACCAUUGAUAUCGAUAUAAGAUAGCUAAUUAGUAAUAUAAACUUGUCCUACAG---------UUUAUCAAUAUUGUUAAUC ..................--.....((((((((.....((((.((((.......))))..)))).......(((((((.(.....)))---------)))))...))))))))... ( -11.20, z-score = -0.82, R) >droEre2.scaffold_4690 7139140 97 - 18748788 CUUUAUCAAUCACCUCCC--AUUCAUCACAAUAUA-CCAUUGAU----------------UAAUUAGCAAUAUAAACUUGUCUUACAGAGAAGCAAGUUUAUCAAUAUUGUUAAUC ..................--........((((...-..))))..----------------..((((((((((((((((((.(((......)))))))))))....)))))))))). ( -15.70, z-score = -3.45, R) >droSec1.super_73 159454 115 + 167737 GUUUAUCAAUCGCCUCCCCCAUUCAUAACAAUAAA-CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUC ..(((((.(((((............((.((((...-..)))).)))))))....)))))...((((((((((((((((((((((...)))..)))))))))....)))))))))). ( -18.40, z-score = -2.11, R) >droSim1.chrX 11890452 115 + 17042790 GUUUAUCAAUCGCCUCCCCCAUUCAUAACAAUAAA-CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUC ..(((((.(((((............((.((((...-..)))).)))))))....)))))...((((((((((((((((((((((...)))..)))))))))....)))))))))). ( -18.40, z-score = -2.11, R) >consensus GUUUAUCAAUCGCCUCCC__AUUCAUAACAAUAAA_CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUC ...(((((((............................))))))).................(((((((((((((((((((...........)))))))))....)))))))))). ( -9.88 = -11.19 + 1.31)
| Location | 15,425,505 – 15,425,610 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.21 |
| Shannon entropy | 0.27016 |
| G+C content | 0.29871 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -11.69 |
| Energy contribution | -13.00 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15425505 105 + 22422827 --UCCCAUUCAUAACAAUAAAACCAUUGAUAUCGAUAUAAGAUAGCUAAUUAGUAAUAUAAACUUGUCCUACAG---------UUUAUCAAUAUUGUUAAUCGAUUGCAUAUGCAA --.........((((((((.....((((.((((.......))))..)))).......(((((((.(.....)))---------)))))...)))))))).....((((....)))) ( -13.60, z-score = -0.79, R) >droEre2.scaffold_4690 7139154 96 - 18748788 --UCCCAUUCAUCACAAUAUA-CCAUUGAU----------------UAAUUAGCAAUAUAAACUUGUCUUACAGAGAAGCAAGUUUAUCAAUAUUGUUAAUCGGUUGCAUAUGCA- --...................-.....(((----------------..((((((((((((((((((.(((......)))))))))))....))))))))))..)))((....)).- ( -20.30, z-score = -3.05, R) >droSec1.super_73 159468 115 + 167737 UCCCCCAUUCAUAACAAUAAA-CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUCGGUUGCAUAUGCAA ................(((..-((((((((((((((((......(((....)))...(((((((((((((...)))..))))))))))..)))))))).))))))))..))).... ( -23.50, z-score = -2.45, R) >droSim1.chrX 11890466 115 + 17042790 UCCCCCAUUCAUAACAAUAAA-CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUCGGUUGCAUAUGCAA ................(((..-((((((((((((((((......(((....)))...(((((((((((((...)))..))))))))))..)))))))).))))))))..))).... ( -23.50, z-score = -2.45, R) >consensus __CCCCAUUCAUAACAAUAAA_CAAUUGAUAGCGAUAUAAGAUAGCUAAUUAGCAAUAUAAACUUGUCUUACAGAGCAGCAAGUUUAUCAAUAUUGUUAAUCGGUUGCAUAUGCAA ....((........((((......))))....................(((((((((((((((((((...........)))))))))....)))))))))).)).(((....))). (-11.69 = -13.00 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:38 2011