| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,420,399 – 15,420,490 |
| Length | 91 |
| Max. P | 0.541332 |
| Location | 15,420,399 – 15,420,490 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 64.70 |
| Shannon entropy | 0.55066 |
| G+C content | 0.54066 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -15.54 |
| Energy contribution | -18.60 |
| Covariance contribution | 3.06 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15420399 91 - 22422827 CUUGGCCC-ACGUCGCGCGGCAUUGGGUUGGUGAUGAUGGUGAUUGG-GCCUAUGAUGAUUGCGAUU------------GCGAUUGCCAUUCCCAAUCCCAGUUA .(..((((-(.(((....)))..)))))..)......(((.((((((-(...(((..((((((....------------))))))..))).)))))))))).... ( -34.50, z-score = -1.48, R) >droSec1.super_73 154837 102 - 167737 CUUGGCCC-AGGUCGCACGGCAUU-GGCUGGCGAUGAUGGUGAUUGG-GCCUAUGAUGAUUGCGAUUCCGAUUCCGAUUGCGAUUCUCAUUCCCAAUCCCAGUUA .((((.((-(.(((((.((((...-.)))))))))..))).((((((-(...((((.((((((((((........)))))))))).)))).)))))))))))... ( -41.30, z-score = -2.62, R) >droSim1.chrX 11912772 102 - 17042790 CUUGGCCC-AGGCCGCACGGCAUU-GGCUGGCGAUGAUGGUGAUUGG-GCCUAUGAUGAUUGCGAUUUCGAUUCCGAUUGCGAUUCCCAUUCCCAAUCCCAGUUA ...(((..-..)))((.((((...-.)))))).....(((.((((((-(...(((..((((((((((........))))))))))..))).)))))))))).... ( -39.00, z-score = -1.93, R) >dp4.chrXL_group1a 999698 81 - 9151740 CUCGACUCGACGGGACUCGACAA--AGAUGAUGUCGAUGGUGAUGGGCGGCUCUGAUCAGCUUUGC-------------UCCACUUCUGCUCUCUG--------- ........(((((((.((((((.--......))))))..(((..((((((((......))))..))-------------)))))))))).))....--------- ( -18.90, z-score = 1.06, R) >consensus CUUGGCCC_ACGUCGCACGGCAUU_GGCUGGCGAUGAUGGUGAUUGG_GCCUAUGAUGAUUGCGAUU____________GCGAUUCCCAUUCCCAAUCCCAGUUA ....(((...((((((.((((.....))))))))))..)))((((((.(...(((..((((((((((........))))))))))..))).)))))))....... (-15.54 = -18.60 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:37 2011