| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,414,644 – 15,414,762 |
| Length | 118 |
| Max. P | 0.730361 |
| Location | 15,414,644 – 15,414,762 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Shannon entropy | 0.38644 |
| G+C content | 0.39991 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -18.58 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15414644 118 + 22422827 -UCUUUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAAAUUGCACUGAGAAUCUGGCAUUU-UUCACUUUAUUUCAACUGUAUGAUAUUA -....(((((.(((((...((((..((((((((...)))))))).....)))).)))))..(((......)))..........)))))...-............................ ( -27.30, z-score = -1.44, R) >droSim1.chrX_random 4032491 119 + 5698898 -UCUUUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAAAUUGCACUGAGAAUCUAGUUUUGGUUGAUUUUAUUUCAACUGUAUGAUGUUA -....(((...(((((...((((..((((((((...)))))))).....)))).)))))..)))((((((((...........))))))))(((((.......)))))............ ( -28.50, z-score = -1.11, R) >droSec1.super_73 149049 119 + 167737 -UCUUUGCCAUUUCGCAAAUGGGUCAUUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAAAUUGCACUGAAAAUCUAGUUUUGGUUGAUUUUAUUUCAACUGUAUGAUGUUA -....(((...(((((...((((....((((((...)))))).......)))).)))))..)))((((((((...........))))))))(((((.......)))))............ ( -26.80, z-score = -0.93, R) >droYak2.chrX 9599420 93 + 21770863 -UCUUUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCUUGCUAUCAUUUCCCCAAGCGAAUCGCACAAAAUUGCGCUGAGAAACUGGCAUUUUUA-------------------------- -....(((((.(((((...((((..((((((.......))...))))..)))).))))).((((......)))).........)))))......-------------------------- ( -24.20, z-score = -1.52, R) >droEre2.scaffold_4690 7128730 94 - 18748788 UCUUUUGCCAUUUCGCAAAUGGGACAAUGGCUUUCCUUGCUAUUAUUUACCCGGGCGAAUCGCACAAACUUACUCUGAGAAUCUAGCAUUUUUG-------------------------- .....(((...(((((...((((..((((((.......)))))).....)))).)))))..)))............((((((.....)))))).-------------------------- ( -19.60, z-score = -1.29, R) >consensus _UCUUUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAAAUUGCACUGAGAAUCUAGCAUUUGUU_A_UUUAUUUCAACUGUAUGAU_UUA .....(((...(((((...((((..((((((.......)))))).....)))).)))))..)))........................................................ (-18.58 = -18.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:34 2011