Locus 14782

Sequence ID dm3.chrX
Location 15,397,255 – 15,397,366
Length 111
Max. P 0.705065
window20342 window20343

overview

Window 2

Location 15,397,255 – 15,397,366
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 81.11
Shannon entropy 0.34675
G+C content 0.41936
Mean single sequence MFE -28.60
Consensus MFE -22.68
Energy contribution -23.64
Covariance contribution 0.96
Combinations/Pair 1.27
Mean z-score -1.09
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.25
SVM RNA-class probability 0.611422
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15397255 111 + 22422827
GAAGAUUGCGAUUGGCGGCUAGGAUAUAAUGAGUUGUGUGCUGUGCAAAUCGAAUGCCAACCAAUCGAAAAUCAUCUGCGAAUCUAUUUGUAAAUUUUUUAAUAAGACAUG
((.((((.(((((((.((((((.((((((....)))))).)))............)))..)))))))..)))).))((((((....))))))................... ( -22.40, z-score =   0.01, R)
>droEre2.scaffold_4690 7111459 101 - 18748788
GAAGAUUGCGAUUGGCGACUAGGAUAUAAUGAGCUCUGUGCUGUGCAAGUCA---GCCAGCCAAUCGAAAAUCAGCUACGGAGCUAUGGAUAG-------GAUAGGAUACG
.....((((.....))))(((...(((....((((((((((((.((......---)))))).....(.....)....))))))))....))).-------..)))...... ( -24.70, z-score =   0.17, R)
>droYak2.chrX 9583032 101 + 21770863
GAAGAUUGCGAUUGGCGGCUAGGAUAUAACGAGCUCUGUGCUGUGCCAAUCA---GCCAGCCAAUUGAAAAUCAGCUA------UUUUAGUAGCUAUUC-AAUAAGAUAUG
(((((((.((((((((((((..(((...((.(((.....)))))....))))---))).))))))))..))))(((((------(....)))))).)))-........... ( -31.10, z-score =  -2.39, R)
>droSec1.super_73 131666 110 + 167737
GAAGAUUGCGAUUGGCGGCUAGGAUAUAAUGAGCUCUGAGCUCUGCAAAUCGCCAGCCAGCCAAUCGAAAAUCAUCUGCGGAUCUAUUUGUGGAUUUUG-AAUAAGAUAUU
...((((.((((((((((((.((((.....((((.....)))).....))).).)))).))))))))..))))(((..((((....))))..)))....-........... ( -35.90, z-score =  -2.33, R)
>droSim1.chrX 11885467 110 + 17042790
GAAGAUUGCGAUUGGCGGCUAGGAUAUAAUGAGCUCUGUGCUGUGCAAAUUAGACGCCAGCCAAUCGAAAAUCAUCUGCGGAUCUAUUUGUGGAUUUUG-AAUAAGAUAUU
...((((.(((((((((((.......((((..((.(......).))..))))...))).))))))))..))))(((..((((....))))..)))....-........... ( -28.90, z-score =  -0.94, R)
>consensus
GAAGAUUGCGAUUGGCGGCUAGGAUAUAAUGAGCUCUGUGCUGUGCAAAUCA___GCCAGCCAAUCGAAAAUCAUCUGCGGAUCUAUUUGUAGAUUUUG_AAUAAGAUAUG
...((((.(((((((((((...(((......(((.....)))......)))....))).))))))))..))))(((((((((....)))))))))................ (-22.68 = -23.64 +   0.96)

alignment

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secondary structure

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dotplot

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Window 3

Location 15,397,255 – 15,397,366
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 81.11
Shannon entropy 0.34675
G+C content 0.41936
Mean single sequence MFE -24.29
Consensus MFE -18.30
Energy contribution -18.78
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.34
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.46
SVM RNA-class probability 0.705065
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15397255 111 - 22422827
CAUGUCUUAUUAAAAAAUUUACAAAUAGAUUCGCAGAUGAUUUUCGAUUGGUUGGCAUUCGAUUUGCACAGCACACAACUCAUUAUAUCCUAGCCGCCAAUCGCAAUCUUC
..........................(((((.((.((......))(((((((.(((....(((......((.......))......)))...))))))))))))))))).. ( -18.70, z-score =  -0.63, R)
>droEre2.scaffold_4690 7111459 101 + 18748788
CGUAUCCUAUC-------CUAUCCAUAGCUCCGUAGCUGAUUUUCGAUUGGCUGGC---UGACUUGCACAGCACAGAGCUCAUUAUAUCCUAGUCGCCAAUCGCAAUCUUC
...........-------........((((....))))((((..((((((((.(((---((........(((.....)))..........))))))))))))).))))... ( -22.17, z-score =  -0.64, R)
>droYak2.chrX 9583032 101 - 21770863
CAUAUCUUAUU-GAAUAGCUACUAAAA------UAGCUGAUUUUCAAUUGGCUGGC---UGAUUGGCACAGCACAGAGCUCGUUAUAUCCUAGCCGCCAAUCGCAAUCUUC
.....((.(((-(((((((((......------))))))...)))))).))...((---.(((((((..(((.....))).((((.....)))).)))))))))....... ( -24.50, z-score =  -1.17, R)
>droSec1.super_73 131666 110 - 167737
AAUAUCUUAUU-CAAAAUCCACAAAUAGAUCCGCAGAUGAUUUUCGAUUGGCUGGCUGGCGAUUUGCAGAGCUCAGAGCUCAUUAUAUCCUAGCCGCCAAUCGCAAUCUUC
...........-..............((((..((.((......))(((((((.((((((.(((.....((((.....)))).....)))))))))))))))))).)))).. ( -33.90, z-score =  -3.06, R)
>droSim1.chrX 11885467 110 - 17042790
AAUAUCUUAUU-CAAAAUCCACAAAUAGAUCCGCAGAUGAUUUUCGAUUGGCUGGCGUCUAAUUUGCACAGCACAGAGCUCAUUAUAUCCUAGCCGCCAAUCGCAAUCUUC
...........-..............((((..((.((......))(((((((.((((((......).))(((.....)))............)))))))))))).)))).. ( -22.20, z-score =  -1.21, R)
>consensus
CAUAUCUUAUU_CAAAAUCUACAAAUAGAUCCGCAGAUGAUUUUCGAUUGGCUGGC___UGAUUUGCACAGCACAGAGCUCAUUAUAUCCUAGCCGCCAAUCGCAAUCUUC
......................................((((..((((((((.(((....(((......(((.....)))......)))...))))))))))).))))... (-18.30 = -18.78 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:33 2011