| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,389,915 – 15,389,970 |
| Length | 55 |
| Max. P | 0.771130 |
| Location | 15,389,915 – 15,389,970 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 76.32 |
| Shannon entropy | 0.37460 |
| G+C content | 0.38081 |
| Mean single sequence MFE | -12.43 |
| Consensus MFE | -8.04 |
| Energy contribution | -9.60 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15389915 55 + 22422827 UUCGCGGGGUACUUAACCUAGUUAAUUCUACUGGGUAUUACUUCAGAAUGAAUGU (((..((((((....(((((((.......)))))))..)))))).)))....... ( -13.80, z-score = -1.99, R) >droSim1.chrX 11877638 52 + 17042790 --UUCGGGGUACUUAACCUAGUUAAUUCUACUGGGUUUUACUUCAGAAUUAAGG- --...((((((...((((((((.......)))))))).))))))..........- ( -14.90, z-score = -2.78, R) >droSec1.super_73 124577 52 + 167737 --UUCGGGGUACUUAACCUAGUUAAUUCUACUGGGUUUUGCUUCAGAAUCGAGG- --...((((((...((((((((.......)))))))).))))))..........- ( -14.90, z-score = -2.33, R) >droYak2.chrX 9575110 51 + 21770863 ---GUGGGGUAUUUAACCUAGUUUAUUUGACCGCUUUUCAGUUAUGAAUCGAUA- ---(((((((.....)))).(((.....))))))..((((....))))......- ( -6.10, z-score = 0.54, R) >consensus __UGCGGGGUACUUAACCUAGUUAAUUCUACUGGGUUUUACUUCAGAAUCAAGG_ .....((((((...((((((((.......)))))))).))))))........... ( -8.04 = -9.60 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:31 2011