| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,435,378 – 11,435,472 |
| Length | 94 |
| Max. P | 0.888971 |
| Location | 11,435,378 – 11,435,472 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.73 |
| Shannon entropy | 0.29551 |
| G+C content | 0.41613 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -13.66 |
| Energy contribution | -13.55 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11435378 94 - 23011544 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAA-----------AUCGAA----AGAUCUGCUGAUCUGGAA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.(((((((.....((.-----------(((...----.))).)).....))))))-))))).)))..))))).. ( -30.00, z-score = -4.05, R) >droSim1.chr2L 11244830 94 - 22036055 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAA-----------AUCGAA----AGAUCUGCUGAUCUGGAA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.(((((((.....((.-----------(((...----.))).)).....))))))-))))).)))..))))).. ( -30.00, z-score = -4.05, R) >droSec1.super_3 6830453 94 - 7220098 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAA-----------AUCGAA----AGAUCUGCUGAUCUGGAA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.(((((((.....((.-----------(((...----.))).)).....))))))-))))).)))..))))).. ( -30.00, z-score = -4.05, R) >droYak2.chr2L 7836021 94 - 22324452 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAA-----------AUGGAA----AGAUGUGCUGAUCUGGAA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.(((((((....(((.-----------.(....----)..)))......))))))-))))).)))..))))).. ( -26.00, z-score = -2.41, R) >droEre2.scaffold_4929 12637348 94 + 26641161 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAGCAA-----------AUCGAA----AGAUCUGCUGAUCUCGGA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.((((.((...((((.-----------(((...----.))).))))...)).)))-))))).)))..))))).. ( -29.40, z-score = -3.13, R) >droAna3.scaffold_12916 12141333 109 + 16180835 AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAAAAAUGAAUAAUAUGAAAAUCGAAAAACGCGGAGAUGGAA-CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.((((((.((...((....)).............(((.......))))).)))))-))))).)))..))))).. ( -22.20, z-score = -1.33, R) >dp4.chr4_group3 6889823 87 - 11692001 AUGAAACGUAUCCAAAGAUGCAUCGAAAGCGAUUUGUGUUCCAG--AGCUAA---------------------AGACCUGGCGCCAUGGAGCCCAAAAACUGCUUGGUAU .......(((((....))))).....(((((.((((.((((((.--.((((.---------------------.....))))....)))))).))))...)))))..... ( -23.00, z-score = -1.64, R) >droPer1.super_1 8337694 87 - 10282868 AUGAAACGUAUCCAAAGAUGCAUCGAAAGCGAUUUGUGUUCCAG--AGCUAA---------------------AGACCUGGCGCCAUGGAGCCCAAAAACUGCUUGGUAU .......(((((....))))).....(((((.((((.((((((.--.((((.---------------------.....))))....)))))).))))...)))))..... ( -23.00, z-score = -1.64, R) >consensus AUGAAACGUAUCCAAAGAUGCAUCAAAAGCGAUUUGUGUUCCAGCUAAACAA___________AUCGAA____AGAUCUGCUGAUCUGGAA_CCAAAGGCUGCUUGGUAU .......(((((....)))))(((((.(((..((((.((((((...........................................))))).))))).)))..))))).. (-13.66 = -13.55 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:40 2011