| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,381,745 – 15,381,795 |
| Length | 50 |
| Max. P | 0.889455 |
| Location | 15,381,745 – 15,381,795 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 91.60 |
| Shannon entropy | 0.14489 |
| G+C content | 0.51600 |
| Mean single sequence MFE | -13.84 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.46 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15381745 50 + 22422827 GGAAACAUUGCACUCCGGCGUGGAGUGGUGUUUGACCGGCUUUAUCUUUC ((((((((..((((((.....))))))))))))..))............. ( -13.50, z-score = -0.87, R) >droYak2.chrX 9567452 50 + 21770863 GGAAACAUUGCACUCCAGGGUGGAGUGGUGUUUGCCCGGCUUUAUCUUUC ((((((((..((((((.....)))))))))))).)).............. ( -15.20, z-score = -1.08, R) >droEre2.scaffold_4690 7096638 50 - 18748788 GGAAACAGUGCACACCAGCGUGGUGUGGUGUUUGCCCGGCUUUAUCUUUU (((((((...((((((.....)))))).))))).)).............. ( -13.50, z-score = -0.13, R) >droSec1.super_73 116813 50 + 167737 GGAAACAUUGCACUCCGGCGUGGAGUGGUGUUUAACCGGGUUUAUCUUUC ((((((((..((((((.....))))))))))))..))............. ( -13.50, z-score = -1.05, R) >droSim1.chrX 11869622 50 + 17042790 GGAAACAUUGCACUCCGGCGUGGAGUGGUGUUUGACCGGGUUUAUCUUUC ((((((((..((((((.....))))))))))))..))............. ( -13.50, z-score = -0.73, R) >consensus GGAAACAUUGCACUCCGGCGUGGAGUGGUGUUUGACCGGCUUUAUCUUUC ((((((((..((((((.....))))))))))))..))............. (-13.58 = -13.46 + -0.12)
| Location | 15,381,745 – 15,381,795 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 91.60 |
| Shannon entropy | 0.14489 |
| G+C content | 0.51600 |
| Mean single sequence MFE | -11.74 |
| Consensus MFE | -11.40 |
| Energy contribution | -11.08 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15381745 50 - 22422827 GAAAGAUAAAGCCGGUCAAACACCACUCCACGCCGGAGUGCAAUGUUUCC ((((.((...((.(((.....)))(((((.....))))))).)).)))). ( -11.10, z-score = -1.38, R) >droYak2.chrX 9567452 50 - 21770863 GAAAGAUAAAGCCGGGCAAACACCACUCCACCCUGGAGUGCAAUGUUUCC ..............((.(((((.((((((.....))))))...))))))) ( -12.90, z-score = -1.60, R) >droEre2.scaffold_4690 7096638 50 + 18748788 AAAAGAUAAAGCCGGGCAAACACCACACCACGCUGGUGUGCACUGUUUCC ..............((.(((((.((((((.....))))))...))))))) ( -12.70, z-score = -0.72, R) >droSec1.super_73 116813 50 - 167737 GAAAGAUAAACCCGGUUAAACACCACUCCACGCCGGAGUGCAAUGUUUCC .............((..(((((.((((((.....))))))...))))))) ( -11.00, z-score = -1.65, R) >droSim1.chrX 11869622 50 - 17042790 GAAAGAUAAACCCGGUCAAACACCACUCCACGCCGGAGUGCAAUGUUUCC ....(((.......)))(((((.((((((.....))))))...))))).. ( -11.00, z-score = -1.54, R) >consensus GAAAGAUAAAGCCGGUCAAACACCACUCCACGCCGGAGUGCAAUGUUUCC .............((..(((((.((((((.....))))))...))))))) (-11.40 = -11.08 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:30 2011