| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,381,138 – 15,381,189 |
| Length | 51 |
| Max. P | 0.985646 |
| Location | 15,381,138 – 15,381,189 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 88.24 |
| Shannon entropy | 0.16205 |
| G+C content | 0.30261 |
| Mean single sequence MFE | -10.47 |
| Consensus MFE | -9.79 |
| Energy contribution | -10.13 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15381138 51 - 22422827 GCUAAUUUCGGAUGAAGUAUGCUUAGUUUUUUGGAAACGAUAAUUUUUUUU ((..(((((....)))))..))........(((....)))........... ( -6.00, z-score = -0.24, R) >droSim1.chrX 11869016 50 - 17042790 GCUAAUUUUUGAUGAAGUUGGCUUAG-UUUUGGGAAACGAUACUUUUUUUU (((((((((....)))))))))..((-(..(.(....).).)))....... ( -10.20, z-score = -2.56, R) >droYak2.chrX 9566837 51 - 21770863 GCGAACUUCGGAUGAAGUUUGCUUAGUUUUUUGGAAACGAUACUUUUUUUU (((((((((....)))))))))..(((...(((....))).)))....... ( -15.20, z-score = -4.12, R) >consensus GCUAAUUUCGGAUGAAGUUUGCUUAGUUUUUUGGAAACGAUACUUUUUUUU (((((((((....)))))))))........(((....)))........... ( -9.79 = -10.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:46:29 2011